Hb_003435_020

Information

Type -
Description -
Location Contig3435: 58495-60914
Sequence    

Annotation

kegg
ID rcu:RCOM_1353400
description ankyrin repeat-containing protein, putative
nr
ID XP_002519454.1
description ankyrin repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9TU71
description Ankyrin repeat domain-containing protein 1 OS=Oryctolagus cuniculus GN=ANKRD1 PE=2 SV=1
trembl
ID B9S0D5
description Ankyrin repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1353400 PE=4 SV=1
Gene Ontology
ID GO:0005515
description ankyrin repeat family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003435_020 0.0 - - ankyrin repeat-containing protein, putative [Ricinus communis]
2 Hb_005054_350 0.0720802385 - - PREDICTED: 60S acidic ribosomal protein P0 [Vitis vinifera]
3 Hb_000172_320 0.0721645502 - - PREDICTED: ribosome biogenesis protein TSR3 homolog [Jatropha curcas]
4 Hb_006693_020 0.0786493889 - - PREDICTED: frataxin, mitochondrial [Gossypium raimondii]
5 Hb_002078_140 0.0792852013 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
6 Hb_000059_370 0.0822125344 - - PREDICTED: U6 snRNA phosphodiesterase [Jatropha curcas]
7 Hb_000431_170 0.0847441268 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 511 [Jatropha curcas]
8 Hb_000227_080 0.0851748982 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002226_070 0.0860323157 - - PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Jatropha curcas]
10 Hb_000390_300 0.0861186677 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase MCC1 [Jatropha curcas]
11 Hb_003780_030 0.0866454006 - - PREDICTED: protein CMSS1 [Jatropha curcas]
12 Hb_004032_010 0.0875876685 - - PREDICTED: uncharacterized protein LOC105635123 [Jatropha curcas]
13 Hb_004108_070 0.0876527704 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Jatropha curcas]
14 Hb_001828_060 0.0897039635 desease resistance Gene Name: AAA_31 nucleotide-binding protein, putative [Ricinus communis]
15 Hb_008554_060 0.0898904885 - - PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Jatropha curcas]
16 Hb_005731_050 0.0915029866 - - hypothetical protein JCGZ_26820 [Jatropha curcas]
17 Hb_002534_150 0.0917389842 - - catalytic, putative [Ricinus communis]
18 Hb_000656_170 0.0926267307 - - lsm1, putative [Ricinus communis]
19 Hb_000032_380 0.0930059642 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002284_240 0.0932287954 - - PREDICTED: coiled-coil domain-containing protein 115 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_003435_020 Hb_003435_020 Hb_005054_350 Hb_005054_350 Hb_003435_020--Hb_005054_350 Hb_000172_320 Hb_000172_320 Hb_003435_020--Hb_000172_320 Hb_006693_020 Hb_006693_020 Hb_003435_020--Hb_006693_020 Hb_002078_140 Hb_002078_140 Hb_003435_020--Hb_002078_140 Hb_000059_370 Hb_000059_370 Hb_003435_020--Hb_000059_370 Hb_000431_170 Hb_000431_170 Hb_003435_020--Hb_000431_170 Hb_000120_470 Hb_000120_470 Hb_005054_350--Hb_000120_470 Hb_000768_090 Hb_000768_090 Hb_005054_350--Hb_000768_090 Hb_001758_100 Hb_001758_100 Hb_005054_350--Hb_001758_100 Hb_000032_380 Hb_000032_380 Hb_005054_350--Hb_000032_380 Hb_005054_350--Hb_002078_140 Hb_002056_050 Hb_002056_050 Hb_000172_320--Hb_002056_050 Hb_002043_130 Hb_002043_130 Hb_000172_320--Hb_002043_130 Hb_000920_110 Hb_000920_110 Hb_000172_320--Hb_000920_110 Hb_000172_320--Hb_002078_140 Hb_011671_100 Hb_011671_100 Hb_000172_320--Hb_011671_100 Hb_015279_010 Hb_015279_010 Hb_000172_320--Hb_015279_010 Hb_000390_300 Hb_000390_300 Hb_006693_020--Hb_000390_300 Hb_006693_020--Hb_000431_170 Hb_000331_200 Hb_000331_200 Hb_006693_020--Hb_000331_200 Hb_004108_070 Hb_004108_070 Hb_006693_020--Hb_004108_070 Hb_000465_390 Hb_000465_390 Hb_006693_020--Hb_000465_390 Hb_000317_390 Hb_000317_390 Hb_006693_020--Hb_000317_390 Hb_124953_020 Hb_124953_020 Hb_002078_140--Hb_124953_020 Hb_001691_140 Hb_001691_140 Hb_002078_140--Hb_001691_140 Hb_001341_150 Hb_001341_150 Hb_002078_140--Hb_001341_150 Hb_000136_260 Hb_000136_260 Hb_002078_140--Hb_000136_260 Hb_001016_150 Hb_001016_150 Hb_002078_140--Hb_001016_150 Hb_001863_430 Hb_001863_430 Hb_002078_140--Hb_001863_430 Hb_001105_030 Hb_001105_030 Hb_000059_370--Hb_001105_030 Hb_000479_090 Hb_000479_090 Hb_000059_370--Hb_000479_090 Hb_002226_070 Hb_002226_070 Hb_000059_370--Hb_002226_070 Hb_000384_100 Hb_000384_100 Hb_000059_370--Hb_000384_100 Hb_002534_150 Hb_002534_150 Hb_000059_370--Hb_002534_150 Hb_001821_010 Hb_001821_010 Hb_000059_370--Hb_001821_010 Hb_000948_160 Hb_000948_160 Hb_000431_170--Hb_000948_160 Hb_000081_160 Hb_000081_160 Hb_000431_170--Hb_000081_160 Hb_000460_030 Hb_000460_030 Hb_000431_170--Hb_000460_030 Hb_000431_170--Hb_000390_300 Hb_010098_050 Hb_010098_050 Hb_000431_170--Hb_010098_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.9056 16.8215 23.1078 26.5691 32.8228 30.8928
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.9501 58.9693 29.5205 26.7316 16.4068

CAGE analysis