Hb_003435_030

Information

Type transcription factor
Description TF Family: C2H2
Location Contig3435: 63299-64144
Sequence    

Annotation

kegg
ID rcu:RCOM_1353410
description nucleic acid binding protein, putative
nr
ID XP_002519455.1
description nucleic acid binding protein, putative [Ricinus communis]
swissprot
ID Q681X4
description Zinc finger protein ZAT5 OS=Arabidopsis thaliana GN=ZAT5 PE=2 SV=1
trembl
ID B9S0D6
description Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_1353410 PE=4 SV=1
Gene Ontology
ID GO:0003676
description zinc finger protein zat5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35883: 63328-64114
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003435_030 0.0 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
2 Hb_000046_120 0.0489160072 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
3 Hb_060253_010 0.0543427611 - - hypothetical protein JCGZ_14707 [Jatropha curcas]
4 Hb_010136_010 0.059297748 - - Putative receptor-like protein kinase [Glycine soja]
5 Hb_001942_010 0.0714331556 - - hypothetical protein JCGZ_20930 [Jatropha curcas]
6 Hb_018591_020 0.0751132865 - - Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast precursor, putative [Ricinus communis]
7 Hb_002702_010 0.0818642835 - - carbohydrate binding protein, putative [Ricinus communis]
8 Hb_001750_020 0.0839122428 - - PREDICTED: MATE efflux family protein 6-like isoform X1 [Jatropha curcas]
9 Hb_007270_020 0.0841805515 - - hypothetical protein JCGZ_09593 [Jatropha curcas]
10 Hb_000520_040 0.0847951041 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
11 Hb_000002_500 0.0872137394 - - PREDICTED: uncharacterized protein LOC105632094 isoform X1 [Jatropha curcas]
12 Hb_003873_020 0.0882323745 - - PREDICTED: root phototropism protein 2 [Jatropha curcas]
13 Hb_102179_010 0.088961111 - - protein binding protein, putative [Ricinus communis]
14 Hb_012395_090 0.0900104935 - - PREDICTED: protein PROTON GRADIENT REGULATION 5, chloroplastic [Jatropha curcas]
15 Hb_001051_010 0.0923421 - - PREDICTED: putative cyclic nucleotide-gated ion channel 15 [Jatropha curcas]
16 Hb_001115_070 0.0923649989 - - RecName: Full=CASP-like protein 2C1; Short=PtCASPL2C1 [Populus trichocarpa]
17 Hb_000500_240 0.0930911413 - - conserved hypothetical protein [Ricinus communis]
18 Hb_011013_040 0.0933054446 transcription factor TF Family: C2C2-YABBY unknown [Populus trichocarpa]
19 Hb_005337_100 0.093780124 - - PREDICTED: uncharacterized protein LOC105629349 [Jatropha curcas]
20 Hb_000329_440 0.096491294 - - PREDICTED: F-box protein At5g51370-like [Jatropha curcas]

Gene co-expression network

sample Hb_003435_030 Hb_003435_030 Hb_000046_120 Hb_000046_120 Hb_003435_030--Hb_000046_120 Hb_060253_010 Hb_060253_010 Hb_003435_030--Hb_060253_010 Hb_010136_010 Hb_010136_010 Hb_003435_030--Hb_010136_010 Hb_001942_010 Hb_001942_010 Hb_003435_030--Hb_001942_010 Hb_018591_020 Hb_018591_020 Hb_003435_030--Hb_018591_020 Hb_002702_010 Hb_002702_010 Hb_003435_030--Hb_002702_010 Hb_000046_120--Hb_001942_010 Hb_000046_120--Hb_018591_020 Hb_000002_500 Hb_000002_500 Hb_000046_120--Hb_000002_500 Hb_000046_120--Hb_060253_010 Hb_012395_090 Hb_012395_090 Hb_000046_120--Hb_012395_090 Hb_007270_020 Hb_007270_020 Hb_060253_010--Hb_007270_020 Hb_000520_040 Hb_000520_040 Hb_060253_010--Hb_000520_040 Hb_000212_410 Hb_000212_410 Hb_060253_010--Hb_000212_410 Hb_009788_020 Hb_009788_020 Hb_060253_010--Hb_009788_020 Hb_000155_020 Hb_000155_020 Hb_010136_010--Hb_000155_020 Hb_011013_040 Hb_011013_040 Hb_010136_010--Hb_011013_040 Hb_001115_070 Hb_001115_070 Hb_010136_010--Hb_001115_070 Hb_004017_030 Hb_004017_030 Hb_010136_010--Hb_004017_030 Hb_010136_010--Hb_012395_090 Hb_001942_010--Hb_012395_090 Hb_001942_010--Hb_011013_040 Hb_001942_010--Hb_002702_010 Hb_001942_010--Hb_010136_010 Hb_002007_220 Hb_002007_220 Hb_018591_020--Hb_002007_220 Hb_033363_040 Hb_033363_040 Hb_018591_020--Hb_033363_040 Hb_025557_060 Hb_025557_060 Hb_018591_020--Hb_025557_060 Hb_000608_290 Hb_000608_290 Hb_018591_020--Hb_000608_290 Hb_018591_020--Hb_000002_500 Hb_002702_010--Hb_012395_090 Hb_002702_010--Hb_011013_040 Hb_004223_150 Hb_004223_150 Hb_002702_010--Hb_004223_150 Hb_002702_010--Hb_000046_120 Hb_003371_080 Hb_003371_080 Hb_002702_010--Hb_003371_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.485236 1.92139 1.54232 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.119523 2.28867

CAGE analysis