Hb_003435_070

Information

Type -
Description -
Location Contig3435: 89677-93875
Sequence    

Annotation

kegg
ID rcu:RCOM_1353560
description Pectate lyase precursor, putative (EC:4.2.2.2)
nr
ID XP_012082453.1
description PREDICTED: probable pectate lyase 12 isoform X3 [Jatropha curcas]
swissprot
ID Q9SCP2
description Probable pectate lyase 12 OS=Arabidopsis thaliana GN=At3g53190 PE=2 SV=2
trembl
ID A0A067K2B3
description Pectate lyase OS=Jatropha curcas GN=JCGZ_16572 PE=3 SV=1
Gene Ontology
ID GO:0030570
description probable pectate lyase 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003435_070 0.0 - - PREDICTED: probable pectate lyase 12 isoform X3 [Jatropha curcas]
2 Hb_005333_120 0.083354325 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2 [Jatropha curcas]
3 Hb_000967_010 0.0885382518 - - hypothetical protein JCGZ_08336 [Jatropha curcas]
4 Hb_001856_150 0.0910807038 - - -
5 Hb_118707_020 0.0992882357 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003058_180 0.1022472172 transcription factor TF Family: HSF hypothetical protein POPTR_0001s28040g [Populus trichocarpa]
7 Hb_008727_030 0.1053935983 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004462_040 0.1056586525 - - unnamed protein product [Vitis vinifera]
9 Hb_000230_160 0.1108817126 - - PREDICTED: uncharacterized protein LOC105631858 isoform X1 [Jatropha curcas]
10 Hb_001775_130 0.1151785213 - - Prephenate dehydratase [Hevea brasiliensis]
11 Hb_000172_740 0.1155392385 - - HXXXD-type acyl-transferase family protein, putative [Theobroma cacao]
12 Hb_002876_190 0.1158639873 transcription factor TF Family: GRAS hypothetical protein PRUPE_ppa017519mg [Prunus persica]
13 Hb_188923_010 0.1183637067 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
14 Hb_006314_020 0.123944066 - - PREDICTED: GABA transporter 1-like [Jatropha curcas]
15 Hb_011452_020 0.1254843789 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 4 [Jatropha curcas]
16 Hb_039096_010 0.1288569891 - - unknown [Populus trichocarpa]
17 Hb_001863_080 0.1303118533 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Jatropha curcas]
18 Hb_000676_380 0.1311532193 - - cytochrome P450 family protein [Populus trichocarpa]
19 Hb_003171_070 0.1311717675 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Citrus sinensis]
20 Hb_135811_040 0.1322189928 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003435_070 Hb_003435_070 Hb_005333_120 Hb_005333_120 Hb_003435_070--Hb_005333_120 Hb_000967_010 Hb_000967_010 Hb_003435_070--Hb_000967_010 Hb_001856_150 Hb_001856_150 Hb_003435_070--Hb_001856_150 Hb_118707_020 Hb_118707_020 Hb_003435_070--Hb_118707_020 Hb_003058_180 Hb_003058_180 Hb_003435_070--Hb_003058_180 Hb_008727_030 Hb_008727_030 Hb_003435_070--Hb_008727_030 Hb_004462_040 Hb_004462_040 Hb_005333_120--Hb_004462_040 Hb_001053_110 Hb_001053_110 Hb_005333_120--Hb_001053_110 Hb_000417_350 Hb_000417_350 Hb_005333_120--Hb_000417_350 Hb_002333_010 Hb_002333_010 Hb_005333_120--Hb_002333_010 Hb_005333_120--Hb_001856_150 Hb_000967_010--Hb_118707_020 Hb_188923_010 Hb_188923_010 Hb_000967_010--Hb_188923_010 Hb_000967_010--Hb_008727_030 Hb_011452_020 Hb_011452_020 Hb_000967_010--Hb_011452_020 Hb_135811_040 Hb_135811_040 Hb_000967_010--Hb_135811_040 Hb_006314_020 Hb_006314_020 Hb_001856_150--Hb_006314_020 Hb_000230_160 Hb_000230_160 Hb_001856_150--Hb_000230_160 Hb_000081_030 Hb_000081_030 Hb_001856_150--Hb_000081_030 Hb_003171_070 Hb_003171_070 Hb_001856_150--Hb_003171_070 Hb_004875_040 Hb_004875_040 Hb_001856_150--Hb_004875_040 Hb_118707_020--Hb_008727_030 Hb_118707_020--Hb_188923_010 Hb_118707_020--Hb_135811_040 Hb_000380_210 Hb_000380_210 Hb_118707_020--Hb_000380_210 Hb_003058_180--Hb_000230_160 Hb_006120_010 Hb_006120_010 Hb_003058_180--Hb_006120_010 Hb_003058_180--Hb_188923_010 Hb_003058_180--Hb_001856_150 Hb_003805_080 Hb_003805_080 Hb_003058_180--Hb_003805_080 Hb_000487_140 Hb_000487_140 Hb_003058_180--Hb_000487_140 Hb_003789_020 Hb_003789_020 Hb_008727_030--Hb_003789_020 Hb_005144_180 Hb_005144_180 Hb_008727_030--Hb_005144_180 Hb_011139_010 Hb_011139_010 Hb_008727_030--Hb_011139_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0133841 0.344107 0.0982819 1.66935 0.0108029 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.15905 0.244143

CAGE analysis