Hb_003438_050

Information

Type -
Description -
Location Contig3438: 84775-112862
Sequence    

Annotation

kegg
ID rcu:RCOM_1093230
description hypothetical protein
nr
ID XP_012078986.1
description PREDICTED: rab3 GTPase-activating protein catalytic subunit isoform X2 [Jatropha curcas]
swissprot
ID P69735
description Rab3 GTPase-activating protein catalytic subunit (Fragments) OS=Rattus norvegicus GN=Rab3gap1 PE=1 SV=2
trembl
ID A0A067LEZ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17385 PE=4 SV=1
Gene Ontology
ID GO:0009507
description rab3 gtpase-activating protein catalytic subunit isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35905: 84781-85604 , PASA_asmbl_35908: 87957-89646 , PASA_asmbl_35909: 93538-93826 , PASA_asmbl_35910: 95009-95240 , PASA_asmbl_35911: 97789-99448 , PASA_asmbl_35912: 98022-99480 , PASA_asmbl_35913: 99640-109789 , PASA_asmbl_35914: 102329-104547 , PASA_asmbl_35915: 111710-112546
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003438_050 0.0 - - PREDICTED: rab3 GTPase-activating protein catalytic subunit isoform X2 [Jatropha curcas]
2 Hb_003025_110 0.0632538457 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
3 Hb_000638_120 0.0671269331 - - PREDICTED: 2-oxoisovalerate dehydrogenase subunit alpha 2, mitochondrial-like [Jatropha curcas]
4 Hb_007632_240 0.0676247853 - - transporter, putative [Ricinus communis]
5 Hb_001040_100 0.0703045436 - - PREDICTED: general transcription factor IIH subunit 4 [Jatropha curcas]
6 Hb_023480_010 0.0723373036 - - cellular nucleic acid binding protein, putative [Ricinus communis]
7 Hb_003010_020 0.0771258072 - - PREDICTED: probable inactive heme oxygenase 2, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_183612_040 0.0788457173 - - PREDICTED: uncharacterized protein LOC105632370 [Jatropha curcas]
9 Hb_000120_920 0.0795349413 - - poly(A) polymerase, putative [Ricinus communis]
10 Hb_003680_150 0.0813808501 - - srpk, putative [Ricinus communis]
11 Hb_002273_120 0.0819657487 - - PREDICTED: probable apyrase 6 [Jatropha curcas]
12 Hb_002175_030 0.0820764861 - - PREDICTED: snRNA-activating protein complex subunit isoform X2 [Jatropha curcas]
13 Hb_001433_070 0.0830571364 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1 [Jatropha curcas]
14 Hb_007441_130 0.0833038965 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_003878_110 0.0852203541 - - PREDICTED: uncharacterized protein LOC105637024 [Jatropha curcas]
16 Hb_000526_050 0.0867314634 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial [Jatropha curcas]
17 Hb_001946_010 0.0867559788 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
18 Hb_003125_160 0.0870013919 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-1 isoform X1 [Jatropha curcas]
19 Hb_002110_230 0.0871793694 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
20 Hb_023386_040 0.08766523 - - PREDICTED: chaperone protein dnaJ 13-like [Populus euphratica]

Gene co-expression network

sample Hb_003438_050 Hb_003438_050 Hb_003025_110 Hb_003025_110 Hb_003438_050--Hb_003025_110 Hb_000638_120 Hb_000638_120 Hb_003438_050--Hb_000638_120 Hb_007632_240 Hb_007632_240 Hb_003438_050--Hb_007632_240 Hb_001040_100 Hb_001040_100 Hb_003438_050--Hb_001040_100 Hb_023480_010 Hb_023480_010 Hb_003438_050--Hb_023480_010 Hb_003010_020 Hb_003010_020 Hb_003438_050--Hb_003010_020 Hb_004410_030 Hb_004410_030 Hb_003025_110--Hb_004410_030 Hb_000011_200 Hb_000011_200 Hb_003025_110--Hb_000011_200 Hb_001946_010 Hb_001946_010 Hb_003025_110--Hb_001946_010 Hb_007575_050 Hb_007575_050 Hb_003025_110--Hb_007575_050 Hb_011930_160 Hb_011930_160 Hb_003025_110--Hb_011930_160 Hb_000617_180 Hb_000617_180 Hb_003025_110--Hb_000617_180 Hb_001289_080 Hb_001289_080 Hb_000638_120--Hb_001289_080 Hb_000638_120--Hb_007632_240 Hb_000638_120--Hb_003025_110 Hb_004689_050 Hb_004689_050 Hb_000638_120--Hb_004689_050 Hb_009467_060 Hb_009467_060 Hb_000638_120--Hb_009467_060 Hb_003847_130 Hb_003847_130 Hb_007632_240--Hb_003847_130 Hb_007632_240--Hb_003025_110 Hb_003375_070 Hb_003375_070 Hb_007632_240--Hb_003375_070 Hb_007632_240--Hb_004410_030 Hb_000035_470 Hb_000035_470 Hb_001040_100--Hb_000035_470 Hb_003159_140 Hb_003159_140 Hb_001040_100--Hb_003159_140 Hb_004020_040 Hb_004020_040 Hb_001040_100--Hb_004020_040 Hb_004319_080 Hb_004319_080 Hb_001040_100--Hb_004319_080 Hb_002681_090 Hb_002681_090 Hb_001040_100--Hb_002681_090 Hb_003680_150 Hb_003680_150 Hb_023480_010--Hb_003680_150 Hb_000983_150 Hb_000983_150 Hb_023480_010--Hb_000983_150 Hb_000544_090 Hb_000544_090 Hb_023480_010--Hb_000544_090 Hb_002684_040 Hb_002684_040 Hb_023480_010--Hb_002684_040 Hb_023480_010--Hb_003025_110 Hb_000853_230 Hb_000853_230 Hb_023480_010--Hb_000853_230 Hb_001416_070 Hb_001416_070 Hb_003010_020--Hb_001416_070 Hb_032050_040 Hb_032050_040 Hb_003010_020--Hb_032050_040 Hb_002273_120 Hb_002273_120 Hb_003010_020--Hb_002273_120 Hb_012194_050 Hb_012194_050 Hb_003010_020--Hb_012194_050 Hb_006909_070 Hb_006909_070 Hb_003010_020--Hb_006909_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.12148 5.45779 5.94245 6.22831 8.80411 11.1373
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.36284 6.19262 3.51144 7.59296 7.67239

CAGE analysis