Hb_003438_060

Information

Type -
Description -
Location Contig3438: 114267-115799
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003438_060 0.0 - - -
2 Hb_048476_160 0.1895629004 - - hypothetical protein JCGZ_19593 [Jatropha curcas]
3 Hb_001147_080 0.2428949782 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_102129_010 0.2631806705 - - multicopper oxidase, putative [Ricinus communis]
5 Hb_000122_060 0.2715065499 - - PREDICTED: protein LURP-one-related 14 [Jatropha curcas]
6 Hb_005654_020 0.2740449771 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
7 Hb_145708_010 0.2816283114 - - PREDICTED: transcription factor ILR3-like isoform X1 [Jatropha curcas]
8 Hb_158803_020 0.2932950683 - - hypothetical protein JCGZ_12890 [Jatropha curcas]
9 Hb_001147_090 0.3071064269 transcription factor TF Family: GRAS DELLA protein GAI1, putative [Ricinus communis]
10 Hb_004846_170 0.3089655128 - - heat-shock protein 70 [Hevea brasiliensis]
11 Hb_044653_010 0.3097233252 - - PREDICTED: GTPase Era, mitochondrial [Jatropha curcas]
12 Hb_125948_010 0.3210503111 - - heat-shock protein, putative [Ricinus communis]
13 Hb_000836_100 0.327529548 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000483_230 0.3283214066 - - PREDICTED: cationic amino acid transporter 6, chloroplastic-like [Jatropha curcas]
15 Hb_000684_340 0.3306075997 - - PREDICTED: L-ascorbate peroxidase 2, cytosolic [Pyrus x bretschneideri]
16 Hb_002542_120 0.3372234144 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
17 Hb_003581_160 0.3377791529 - - -
18 Hb_000181_440 0.3403772859 - - -
19 Hb_137914_010 0.3551246574 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
20 Hb_011468_010 0.3604515332 - - hypothetical protein B456_008G198600 [Gossypium raimondii]

Gene co-expression network

sample Hb_003438_060 Hb_003438_060 Hb_048476_160 Hb_048476_160 Hb_003438_060--Hb_048476_160 Hb_001147_080 Hb_001147_080 Hb_003438_060--Hb_001147_080 Hb_102129_010 Hb_102129_010 Hb_003438_060--Hb_102129_010 Hb_000122_060 Hb_000122_060 Hb_003438_060--Hb_000122_060 Hb_005654_020 Hb_005654_020 Hb_003438_060--Hb_005654_020 Hb_145708_010 Hb_145708_010 Hb_003438_060--Hb_145708_010 Hb_158803_020 Hb_158803_020 Hb_048476_160--Hb_158803_020 Hb_048476_160--Hb_102129_010 Hb_001147_090 Hb_001147_090 Hb_048476_160--Hb_001147_090 Hb_048476_160--Hb_001147_080 Hb_000483_230 Hb_000483_230 Hb_048476_160--Hb_000483_230 Hb_001147_080--Hb_001147_090 Hb_001147_080--Hb_102129_010 Hb_002984_020 Hb_002984_020 Hb_001147_080--Hb_002984_020 Hb_000207_420 Hb_000207_420 Hb_001147_080--Hb_000207_420 Hb_102129_010--Hb_001147_090 Hb_102129_010--Hb_145708_010 Hb_102129_010--Hb_158803_020 Hb_010810_040 Hb_010810_040 Hb_102129_010--Hb_010810_040 Hb_125948_010 Hb_125948_010 Hb_000122_060--Hb_125948_010 Hb_002039_050 Hb_002039_050 Hb_000122_060--Hb_002039_050 Hb_044653_010 Hb_044653_010 Hb_000122_060--Hb_044653_010 Hb_111876_010 Hb_111876_010 Hb_000122_060--Hb_111876_010 Hb_001506_030 Hb_001506_030 Hb_000122_060--Hb_001506_030 Hb_005654_020--Hb_145708_010 Hb_003581_160 Hb_003581_160 Hb_005654_020--Hb_003581_160 Hb_005654_020--Hb_102129_010 Hb_005654_020--Hb_048476_160 Hb_000563_580 Hb_000563_580 Hb_005654_020--Hb_000563_580 Hb_145708_010--Hb_001147_090 Hb_145708_010--Hb_001147_080 Hb_145708_010--Hb_048476_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.13037 0 0.0637308 0.121842 0.0229395
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis