Hb_003439_090

Information

Type -
Description -
Location Contig3439: 71485-73479
Sequence    

Annotation

kegg
ID rcu:RCOM_0373000
description kinase, putative (EC:2.7.10.2)
nr
ID XP_002534539.1
description kinase, putative [Ricinus communis]
swissprot
ID O80939
description L-type lectin-domain containing receptor kinase IV.1 OS=Arabidopsis thaliana GN=LECRK41 PE=2 SV=1
trembl
ID B9T8H0
description Kinase, putative OS=Ricinus communis GN=RCOM_0373000 PE=3 SV=1
Gene Ontology
ID GO:0004672
description l-type lectin-domain containing receptor kinase -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35921: 72004-72164 , PASA_asmbl_35922: 72541-73479
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003439_090 0.0 - - kinase, putative [Ricinus communis]
2 Hb_000586_100 0.0668456602 - - conserved hypothetical protein [Ricinus communis]
3 Hb_013914_020 0.0692009194 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
4 Hb_134017_010 0.0783193151 - - kinase, putative [Ricinus communis]
5 Hb_000045_180 0.0841667576 - - aquaporin PIP1 [Hevea brasiliensis]
6 Hb_003430_020 0.0871450777 - - PREDICTED: aldehyde dehydrogenase family 2 member B7, mitochondrial-like [Jatropha curcas]
7 Hb_000407_080 0.0884796243 - - 1-aminocyclopropane-1-carboxylate oxidase [Hevea brasiliensis]
8 Hb_000152_250 0.0885799418 - - PREDICTED: uncharacterized protein LOC105648569 [Jatropha curcas]
9 Hb_006020_010 0.1028543492 - - PREDICTED: probable disease resistance protein At4g27220 [Jatropha curcas]
10 Hb_006364_020 0.1057507697 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 [Jatropha curcas]
11 Hb_015473_010 0.1080801178 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
12 Hb_009581_050 0.1082062028 - - hypothetical protein CISIN_1g0025812mg, partial [Citrus sinensis]
13 Hb_000907_120 0.1099603233 transcription factor TF Family: G2-like PREDICTED: transcription repressor KAN1-like [Populus euphratica]
14 Hb_000077_460 0.1108111941 - - -
15 Hb_003439_020 0.1109278058 - - PREDICTED: L-type lectin-domain containing receptor kinase IV.1-like [Solanum lycopersicum]
16 Hb_130967_010 0.1117775512 - - UDP-glucosyltransferase, putative [Ricinus communis]
17 Hb_028207_030 0.1157623353 - - PREDICTED: non-specific lipid-transfer protein 8-like [Citrus sinensis]
18 Hb_002735_010 0.1196301673 - - PREDICTED: CLAVATA3/ESR (CLE)-related protein 44 [Prunus mume]
19 Hb_003052_120 0.1237496038 - - hypothetical protein POPTR_0008s10970g [Populus trichocarpa]
20 Hb_003376_200 0.1238203461 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_003439_090 Hb_003439_090 Hb_000586_100 Hb_000586_100 Hb_003439_090--Hb_000586_100 Hb_013914_020 Hb_013914_020 Hb_003439_090--Hb_013914_020 Hb_134017_010 Hb_134017_010 Hb_003439_090--Hb_134017_010 Hb_000045_180 Hb_000045_180 Hb_003439_090--Hb_000045_180 Hb_003430_020 Hb_003430_020 Hb_003439_090--Hb_003430_020 Hb_000407_080 Hb_000407_080 Hb_003439_090--Hb_000407_080 Hb_000586_100--Hb_013914_020 Hb_000586_100--Hb_000407_080 Hb_006020_010 Hb_006020_010 Hb_000586_100--Hb_006020_010 Hb_006364_020 Hb_006364_020 Hb_000586_100--Hb_006364_020 Hb_003052_120 Hb_003052_120 Hb_000586_100--Hb_003052_120 Hb_013914_020--Hb_000407_080 Hb_013914_020--Hb_000045_180 Hb_017866_020 Hb_017866_020 Hb_013914_020--Hb_017866_020 Hb_013914_020--Hb_003052_120 Hb_003439_020 Hb_003439_020 Hb_134017_010--Hb_003439_020 Hb_003376_200 Hb_003376_200 Hb_134017_010--Hb_003376_200 Hb_074312_020 Hb_074312_020 Hb_134017_010--Hb_074312_020 Hb_130967_010 Hb_130967_010 Hb_134017_010--Hb_130967_010 Hb_134017_010--Hb_003430_020 Hb_000077_460 Hb_000077_460 Hb_000045_180--Hb_000077_460 Hb_000045_180--Hb_017866_020 Hb_003938_010 Hb_003938_010 Hb_000045_180--Hb_003938_010 Hb_002007_140 Hb_002007_140 Hb_000045_180--Hb_002007_140 Hb_009581_040 Hb_009581_040 Hb_003430_020--Hb_009581_040 Hb_009581_050 Hb_009581_050 Hb_003430_020--Hb_009581_050 Hb_005183_200 Hb_005183_200 Hb_003430_020--Hb_005183_200 Hb_012807_060 Hb_012807_060 Hb_003430_020--Hb_012807_060 Hb_000407_080--Hb_009581_050 Hb_000407_080--Hb_134017_010 Hb_003807_020 Hb_003807_020 Hb_000407_080--Hb_003807_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0123489 7.23883 0.716526 4.62992 0.00997174 0.00957992
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 6.34063 0.67733

CAGE analysis