Hb_003440_020

Information

Type -
Description -
Location Contig3440: 17867-27536
Sequence    

Annotation

kegg
ID cit:102608153
description serine protease SPPA, chloroplastic-like
nr
ID XP_012092905.1
description PREDICTED: serine protease SPPA, chloroplastic isoform X2 [Jatropha curcas]
swissprot
ID Q9C9C0
description Serine protease SPPA, chloroplastic OS=Arabidopsis thaliana GN=SPPA PE=2 SV=1
trembl
ID A0A067JBD4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05807 PE=4 SV=1
Gene Ontology
ID GO:0009534
description serine protease chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35924: 17945-22054 , PASA_asmbl_35925: 22093-26125
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003440_020 0.0 - - PREDICTED: serine protease SPPA, chloroplastic isoform X2 [Jatropha curcas]
2 Hb_000358_020 0.0672546522 - - PREDICTED: uncharacterized protein C05D11.7-like [Jatropha curcas]
3 Hb_000909_080 0.0718762166 - - PREDICTED: inosine-5'-monophosphate dehydrogenase 2-like [Jatropha curcas]
4 Hb_005218_080 0.0789463998 - - PREDICTED: branched-chain-amino-acid aminotransferase 3, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_055690_010 0.0808234171 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
6 Hb_000890_080 0.0835654071 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Populus euphratica]
7 Hb_106890_010 0.0837512024 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
8 Hb_002281_020 0.0840544291 - - PREDICTED: actin-related protein 8 [Jatropha curcas]
9 Hb_030736_040 0.0863015147 - - PREDICTED: uncharacterized protein LOC105638926 isoform X1 [Jatropha curcas]
10 Hb_003355_010 0.0864379781 - - Heat shock 70 kDa protein, putative [Ricinus communis]
11 Hb_002529_090 0.089152784 rubber biosynthesis Gene Name: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Hevea brasiliensis]
12 Hb_000116_250 0.0899031869 - - PREDICTED: DNA mismatch repair protein MLH3 [Jatropha curcas]
13 Hb_008375_010 0.0937288209 - - PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X3 [Pyrus x bretschneideri]
14 Hb_000585_110 0.0953857853 - - PREDICTED: probable protein phosphatase 2C 66 [Jatropha curcas]
15 Hb_001105_100 0.0965701517 - - PREDICTED: cathepsin B [Jatropha curcas]
16 Hb_007441_310 0.0967296598 - - PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Jatropha curcas]
17 Hb_007416_110 0.1016139601 - - PREDICTED: probable cyclic nucleotide-gated ion channel 14 isoform X1 [Jatropha curcas]
18 Hb_008147_080 0.1018054226 - - PREDICTED: uncharacterized protein LOC105646805 isoform X2 [Jatropha curcas]
19 Hb_005686_130 0.1032656663 rubber biosynthesis Gene Name: Isopentenyl-diphosphate delta isomerase isopentenyl pyrophosphate isomerase [Hevea brasiliensis]
20 Hb_000035_350 0.1043715284 - - PREDICTED: monogalactosyldiacylglycerol synthase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_003440_020 Hb_003440_020 Hb_000358_020 Hb_000358_020 Hb_003440_020--Hb_000358_020 Hb_000909_080 Hb_000909_080 Hb_003440_020--Hb_000909_080 Hb_005218_080 Hb_005218_080 Hb_003440_020--Hb_005218_080 Hb_055690_010 Hb_055690_010 Hb_003440_020--Hb_055690_010 Hb_000890_080 Hb_000890_080 Hb_003440_020--Hb_000890_080 Hb_106890_010 Hb_106890_010 Hb_003440_020--Hb_106890_010 Hb_000358_020--Hb_000909_080 Hb_000358_020--Hb_055690_010 Hb_000358_020--Hb_005218_080 Hb_000035_350 Hb_000035_350 Hb_000358_020--Hb_000035_350 Hb_030736_040 Hb_030736_040 Hb_000358_020--Hb_030736_040 Hb_034083_020 Hb_034083_020 Hb_000909_080--Hb_034083_020 Hb_000909_080--Hb_055690_010 Hb_000365_010 Hb_000365_010 Hb_000909_080--Hb_000365_010 Hb_001105_100 Hb_001105_100 Hb_000909_080--Hb_001105_100 Hb_005218_080--Hb_000909_080 Hb_008147_080 Hb_008147_080 Hb_005218_080--Hb_008147_080 Hb_171718_010 Hb_171718_010 Hb_005218_080--Hb_171718_010 Hb_002762_110 Hb_002762_110 Hb_005218_080--Hb_002762_110 Hb_000585_110 Hb_000585_110 Hb_055690_010--Hb_000585_110 Hb_055690_010--Hb_030736_040 Hb_002150_020 Hb_002150_020 Hb_055690_010--Hb_002150_020 Hb_008375_010 Hb_008375_010 Hb_055690_010--Hb_008375_010 Hb_005571_010 Hb_005571_010 Hb_055690_010--Hb_005571_010 Hb_004348_040 Hb_004348_040 Hb_000890_080--Hb_004348_040 Hb_002232_160 Hb_002232_160 Hb_000890_080--Hb_002232_160 Hb_000070_110 Hb_000070_110 Hb_000890_080--Hb_000070_110 Hb_002529_090 Hb_002529_090 Hb_000890_080--Hb_002529_090 Hb_007416_110 Hb_007416_110 Hb_000890_080--Hb_007416_110 Hb_003355_010 Hb_003355_010 Hb_106890_010--Hb_003355_010 Hb_106890_010--Hb_030736_040 Hb_003490_060 Hb_003490_060 Hb_106890_010--Hb_003490_060 Hb_106890_010--Hb_005571_010 Hb_007741_120 Hb_007741_120 Hb_106890_010--Hb_007741_120 Hb_019654_020 Hb_019654_020 Hb_106890_010--Hb_019654_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.43757 4.41558 10.668 8.85237 1.68511 2.42742
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.51066 5.48561 4.343 9.87477 15.3966

CAGE analysis