Hb_003442_050

Information

Type -
Description -
Location Contig3442: 36272-48077
Sequence    

Annotation

kegg
ID rcu:RCOM_1096970
description S-locus-specific glycoprotein S6 precursor, putative (EC:2.7.10.2)
nr
ID XP_012091449.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
swissprot
ID O64781
description G-type lectin S-receptor-like serine/threonine-protein kinase At1g61390 OS=Arabidopsis thaliana GN=At1g61390 PE=2 SV=1
trembl
ID A0A067JDL7
description Serine/threonine-protein kinase OS=Jatropha curcas GN=JCGZ_21324 PE=3 SV=1
Gene Ontology
ID GO:0004674
description s-locus-specific glycoprotein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35940: 33184-36263 , PASA_asmbl_35942: 37219-40577
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003442_050 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
2 Hb_002760_060 0.1584123305 - - PREDICTED: uncharacterized protein LOC105641235 [Jatropha curcas]
3 Hb_001514_040 0.1591927327 - - l-asparaginase, putative [Ricinus communis]
4 Hb_000039_100 0.1625739103 - - PREDICTED: uncharacterized protein LOC105649440 [Jatropha curcas]
5 Hb_000172_300 0.1635163045 - - PREDICTED: L-ascorbate oxidase-like [Jatropha curcas]
6 Hb_005081_060 0.163632239 - - hypothetical protein EUGRSUZ_C00833 [Eucalyptus grandis]
7 Hb_048653_040 0.164058401 - - ankyrin repeat family protein [Populus trichocarpa]
8 Hb_116349_050 0.1675124823 - - formin homology 2 domain-containing family protein [Populus trichocarpa]
9 Hb_013057_030 0.1686482287 - - conserved hypothetical protein [Ricinus communis]
10 Hb_033153_010 0.1689133226 - - PREDICTED: MLO-like protein 12 [Jatropha curcas]
11 Hb_000284_060 0.175177539 desease resistance Gene Name: NB-ARC disease resistance protein (TIR-NBS-LRR class), putative [Medicago truncatula]
12 Hb_000414_100 0.1763272704 - - PREDICTED: uncharacterized protein LOC105643784 [Jatropha curcas]
13 Hb_001277_150 0.1797130628 - - hypothetical protein VITISV_043492 [Vitis vinifera]
14 Hb_005000_230 0.1806545863 transcription factor TF Family: bHLH PREDICTED: putative transcription factor bHLH041 [Jatropha curcas]
15 Hb_003847_140 0.1810114671 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Jatropha curcas]
16 Hb_039650_010 0.1819479447 - - cellulose synthase-like protein [Populus tomentosa]
17 Hb_008707_020 0.1825321329 - - ATP binding protein, putative [Ricinus communis]
18 Hb_000277_020 0.1851972013 - - hypothetical protein JCGZ_08656 [Jatropha curcas]
19 Hb_001437_200 0.1855463082 - - PREDICTED: UDP-glycosyltransferase 86A2 [Jatropha curcas]
20 Hb_001403_070 0.1885481887 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_003442_050 Hb_003442_050 Hb_002760_060 Hb_002760_060 Hb_003442_050--Hb_002760_060 Hb_001514_040 Hb_001514_040 Hb_003442_050--Hb_001514_040 Hb_000039_100 Hb_000039_100 Hb_003442_050--Hb_000039_100 Hb_000172_300 Hb_000172_300 Hb_003442_050--Hb_000172_300 Hb_005081_060 Hb_005081_060 Hb_003442_050--Hb_005081_060 Hb_048653_040 Hb_048653_040 Hb_003442_050--Hb_048653_040 Hb_033153_010 Hb_033153_010 Hb_002760_060--Hb_033153_010 Hb_000414_100 Hb_000414_100 Hb_002760_060--Hb_000414_100 Hb_174829_040 Hb_174829_040 Hb_002760_060--Hb_174829_040 Hb_001277_150 Hb_001277_150 Hb_002760_060--Hb_001277_150 Hb_002760_060--Hb_001514_040 Hb_011671_290 Hb_011671_290 Hb_002760_060--Hb_011671_290 Hb_001922_160 Hb_001922_160 Hb_001514_040--Hb_001922_160 Hb_013057_030 Hb_013057_030 Hb_001514_040--Hb_013057_030 Hb_001514_040--Hb_048653_040 Hb_001514_040--Hb_033153_010 Hb_011054_030 Hb_011054_030 Hb_000039_100--Hb_011054_030 Hb_000039_100--Hb_000172_300 Hb_001274_040 Hb_001274_040 Hb_000039_100--Hb_001274_040 Hb_000039_100--Hb_048653_040 Hb_001437_200 Hb_001437_200 Hb_000039_100--Hb_001437_200 Hb_000039_100--Hb_005081_060 Hb_116349_050 Hb_116349_050 Hb_000172_300--Hb_116349_050 Hb_000172_300--Hb_048653_040 Hb_000172_300--Hb_011054_030 Hb_000172_300--Hb_174829_040 Hb_012702_010 Hb_012702_010 Hb_000172_300--Hb_012702_010 Hb_003847_140 Hb_003847_140 Hb_005081_060--Hb_003847_140 Hb_039650_010 Hb_039650_010 Hb_005081_060--Hb_039650_010 Hb_000656_360 Hb_000656_360 Hb_005081_060--Hb_000656_360 Hb_005081_060--Hb_001274_040 Hb_008707_020 Hb_008707_020 Hb_005081_060--Hb_008707_020 Hb_005081_060--Hb_001437_200 Hb_048653_040--Hb_011054_030 Hb_048653_040--Hb_001437_200 Hb_055706_010 Hb_055706_010 Hb_048653_040--Hb_055706_010 Hb_048653_040--Hb_116349_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0138182 9.81635 0.26772 0.299416 0 0.390651
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0870472 0.106563 0.117098 0.690077 0.147005

CAGE analysis