Hb_003446_040

Information

Type -
Description -
Location Contig3446: 39905-42662
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003446_040 0.0 - - -
2 Hb_004413_030 0.2102758685 - - Retrotransposon protein, putative [Theobroma cacao]
3 Hb_001277_310 0.2335388349 - - PREDICTED: putative ribonuclease H protein At1g65750 [Phoenix dactylifera]
4 Hb_005532_010 0.2533430611 - - -
5 Hb_135624_010 0.2728928389 - - PREDICTED: inositol transporter 4-like [Jatropha curcas]
6 Hb_001009_130 0.275018191 - - hypothetical protein JCGZ_11336 [Jatropha curcas]
7 Hb_123521_010 0.2762956794 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
8 Hb_021616_010 0.2876591741 - - -
9 Hb_062244_010 0.2877061631 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_025457_010 0.2886125263 - - -
11 Hb_003760_040 0.2933756296 - - organic anion transporter, putative [Ricinus communis]
12 Hb_006344_010 0.2952388366 - - -
13 Hb_015707_010 0.2973237031 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
14 Hb_010142_080 0.3022822707 - - PREDICTED: uncharacterized protein LOC105630660 [Jatropha curcas]
15 Hb_140572_010 0.3057932491 - - PREDICTED: glucan endo-1,3-beta-glucosidase 7-like [Jatropha curcas]
16 Hb_174876_010 0.3071573436 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
17 Hb_062482_010 0.3097608403 - - -
18 Hb_004724_230 0.3110281631 - - hypothetical protein JCGZ_12701 [Jatropha curcas]
19 Hb_002513_030 0.3130327957 - - PREDICTED: alpha-L-fucosidase 2-like isoform X2 [Elaeis guineensis]
20 Hb_161929_010 0.3165372915 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]

Gene co-expression network

sample Hb_003446_040 Hb_003446_040 Hb_004413_030 Hb_004413_030 Hb_003446_040--Hb_004413_030 Hb_001277_310 Hb_001277_310 Hb_003446_040--Hb_001277_310 Hb_005532_010 Hb_005532_010 Hb_003446_040--Hb_005532_010 Hb_135624_010 Hb_135624_010 Hb_003446_040--Hb_135624_010 Hb_001009_130 Hb_001009_130 Hb_003446_040--Hb_001009_130 Hb_123521_010 Hb_123521_010 Hb_003446_040--Hb_123521_010 Hb_004413_030--Hb_135624_010 Hb_062244_010 Hb_062244_010 Hb_004413_030--Hb_062244_010 Hb_004413_030--Hb_005532_010 Hb_004413_030--Hb_001009_130 Hb_004413_030--Hb_001277_310 Hb_000144_140 Hb_000144_140 Hb_001277_310--Hb_000144_140 Hb_006344_010 Hb_006344_010 Hb_001277_310--Hb_006344_010 Hb_001277_310--Hb_001009_130 Hb_001277_310--Hb_135624_010 Hb_005532_010--Hb_062244_010 Hb_010142_080 Hb_010142_080 Hb_005532_010--Hb_010142_080 Hb_021616_010 Hb_021616_010 Hb_005532_010--Hb_021616_010 Hb_009421_010 Hb_009421_010 Hb_005532_010--Hb_009421_010 Hb_005483_010 Hb_005483_010 Hb_005532_010--Hb_005483_010 Hb_135624_010--Hb_062244_010 Hb_135624_010--Hb_001009_130 Hb_135624_010--Hb_005532_010 Hb_135624_010--Hb_000144_140 Hb_135624_010--Hb_006344_010 Hb_001009_130--Hb_062244_010 Hb_001009_130--Hb_000144_140 Hb_010626_020 Hb_010626_020 Hb_123521_010--Hb_010626_020 Hb_000544_140 Hb_000544_140 Hb_123521_010--Hb_000544_140 Hb_000370_010 Hb_000370_010 Hb_123521_010--Hb_000370_010 Hb_140572_010 Hb_140572_010 Hb_123521_010--Hb_140572_010 Hb_123521_010--Hb_006344_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.367191 0.0914767 0 0.25048 0.140468 2.52953
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.113336 0 5.69408 0.954303 0

CAGE analysis