Hb_003446_050

Information

Type -
Description -
Location Contig3446: 55574-58239
Sequence    

Annotation

kegg
ID mtr:MTR_4g091790
description S-locus-specific glycoprotein S14
nr
ID KJB12737.1
description hypothetical protein B456_002G034000, partial [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2M676
description Gossypium raimondii chromosome 2, whole genome shotgun sequence (Fragment) OS=Gossypium raimondii GN=B456_002G034000 PE=4 SV=1
Gene Ontology
ID GO:0016772
description s-locus-specific glycoprotein s13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35958: 57862-58064
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003446_050 0.0 - - hypothetical protein B456_002G034000, partial [Gossypium raimondii]
2 Hb_000326_060 0.1885146009 - - PREDICTED: uncharacterized protein LOC104214925 [Nicotiana sylvestris]
3 Hb_132998_020 0.1912147755 - - acyl carrier protein 1, chloroplastic-like [Jatropha curcas]
4 Hb_007617_020 0.195016449 - - conserved hypothetical protein [Ricinus communis]
5 Hb_079268_010 0.1988590503 - - -
6 Hb_012033_020 0.1999134531 - - -
7 Hb_064264_010 0.201944561 - - hypothetical protein [Zea mays]
8 Hb_011004_080 0.206741658 - - PREDICTED: 60S ribosomal protein L37-3-like [Cucumis sativus]
9 Hb_000879_010 0.2091925967 - - PREDICTED: uncharacterized protein LOC105630824 [Jatropha curcas]
10 Hb_009265_090 0.2105357975 - - PREDICTED: uncharacterized protein LOC105649618 [Jatropha curcas]
11 Hb_168878_010 0.2107884657 - - 60S ribosomal protein L32A [Hevea brasiliensis]
12 Hb_169246_010 0.2115541654 - - conserved hypothetical protein [Ricinus communis]
13 Hb_114893_030 0.2146024713 - - PREDICTED: ribosome-recycling factor, chloroplastic [Jatropha curcas]
14 Hb_000103_060 0.2147861972 - - hypothetical protein JCGZ_02206 [Jatropha curcas]
15 Hb_009222_020 0.2147892633 - - hypothetical protein AALP_AA5G087000 [Arabis alpina]
16 Hb_011805_080 0.2148350075 - - PREDICTED: uncharacterized protein LOC100242357 [Vitis vinifera]
17 Hb_002217_180 0.2149298647 transcription factor TF Family: MYB PREDICTED: transcription factor MYB108-like [Populus euphratica]
18 Hb_009486_150 0.2153832126 - - 60S ribosomal protein L37a-2 [Medicago truncatula]
19 Hb_001504_020 0.2154179885 - - 40S ribosomal protein S12A [Hevea brasiliensis]
20 Hb_001946_210 0.2167691715 - - ribosomal protein l7ae, putative [Ricinus communis]

Gene co-expression network

sample Hb_003446_050 Hb_003446_050 Hb_000326_060 Hb_000326_060 Hb_003446_050--Hb_000326_060 Hb_132998_020 Hb_132998_020 Hb_003446_050--Hb_132998_020 Hb_007617_020 Hb_007617_020 Hb_003446_050--Hb_007617_020 Hb_079268_010 Hb_079268_010 Hb_003446_050--Hb_079268_010 Hb_012033_020 Hb_012033_020 Hb_003446_050--Hb_012033_020 Hb_064264_010 Hb_064264_010 Hb_003446_050--Hb_064264_010 Hb_005568_080 Hb_005568_080 Hb_000326_060--Hb_005568_080 Hb_033772_050 Hb_033772_050 Hb_000326_060--Hb_033772_050 Hb_009265_090 Hb_009265_090 Hb_000326_060--Hb_009265_090 Hb_009486_190 Hb_009486_190 Hb_000326_060--Hb_009486_190 Hb_000264_090 Hb_000264_090 Hb_000326_060--Hb_000264_090 Hb_000363_140 Hb_000363_140 Hb_000326_060--Hb_000363_140 Hb_132998_020--Hb_079268_010 Hb_009780_080 Hb_009780_080 Hb_132998_020--Hb_009780_080 Hb_005690_020 Hb_005690_020 Hb_132998_020--Hb_005690_020 Hb_132998_020--Hb_000326_060 Hb_000454_060 Hb_000454_060 Hb_132998_020--Hb_000454_060 Hb_011805_080 Hb_011805_080 Hb_007617_020--Hb_011805_080 Hb_000487_250 Hb_000487_250 Hb_007617_020--Hb_000487_250 Hb_001946_210 Hb_001946_210 Hb_007617_020--Hb_001946_210 Hb_002311_350 Hb_002311_350 Hb_007617_020--Hb_002311_350 Hb_002811_230 Hb_002811_230 Hb_007617_020--Hb_002811_230 Hb_169246_010 Hb_169246_010 Hb_007617_020--Hb_169246_010 Hb_013839_010 Hb_013839_010 Hb_079268_010--Hb_013839_010 Hb_137068_010 Hb_137068_010 Hb_079268_010--Hb_137068_010 Hb_079268_010--Hb_005568_080 Hb_000317_400 Hb_000317_400 Hb_079268_010--Hb_000317_400 Hb_188209_010 Hb_188209_010 Hb_012033_020--Hb_188209_010 Hb_005511_100 Hb_005511_100 Hb_012033_020--Hb_005511_100 Hb_000710_010 Hb_000710_010 Hb_012033_020--Hb_000710_010 Hb_021576_040 Hb_021576_040 Hb_012033_020--Hb_021576_040 Hb_000510_330 Hb_000510_330 Hb_012033_020--Hb_000510_330 Hb_046049_010 Hb_046049_010 Hb_064264_010--Hb_046049_010 Hb_000101_270 Hb_000101_270 Hb_064264_010--Hb_000101_270 Hb_042083_050 Hb_042083_050 Hb_064264_010--Hb_042083_050 Hb_002868_010 Hb_002868_010 Hb_064264_010--Hb_002868_010 Hb_064264_010--Hb_001946_210 Hb_175215_010 Hb_175215_010 Hb_064264_010--Hb_175215_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.348614 0.395081 0.201349 0.0562785 0.24279 0.273061
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.335186 0.949287 0.0494215 0.252833 0

CAGE analysis