Hb_003449_030

Information

Type -
Description -
Location Contig3449: 24402-26028
Sequence    

Annotation

kegg
ID pmum:103324413
description 5'-adenylylsulfate reductase 3, chloroplastic-like
nr
ID XP_010448955.1
description PREDICTED: 5'-adenylylsulfate reductase 3, chloroplastic-like [Camelina sativa]
swissprot
ID P92979
description 5'-adenylylsulfate reductase 1, chloroplastic OS=Arabidopsis thaliana GN=APR1 PE=1 SV=2
trembl
ID Q8W1A1
description Adenosine 5'-phosphosulfate reductase OS=Glycine max PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35963: 24422-26366 , PASA_asmbl_35965: 26177-26333
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003449_030 0.0 - - PREDICTED: 5'-adenylylsulfate reductase 3, chloroplastic-like [Camelina sativa]
2 Hb_017857_010 0.1669495448 - - -
3 Hb_006615_160 0.1764340612 - - PREDICTED: UDP-glycosyltransferase 89B1-like [Jatropha curcas]
4 Hb_000567_350 0.1771663888 - - PREDICTED: probable acyl-activating enzyme 6 [Jatropha curcas]
5 Hb_012743_010 0.1818496145 - - phosphate transporter [Manihot esculenta]
6 Hb_000062_490 0.1839962023 - - PREDICTED: lipoxygenase 6, chloroplastic [Jatropha curcas]
7 Hb_032050_070 0.1845523821 - - PREDICTED: peroxidase 12-like [Jatropha curcas]
8 Hb_139139_010 0.1878596335 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
9 Hb_000391_060 0.1886138011 - - PREDICTED: uncharacterized protein LOC104445137 [Eucalyptus grandis]
10 Hb_001405_060 0.1905182389 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 4-like [Jatropha curcas]
11 Hb_005056_100 0.1921021356 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Jatropha curcas]
12 Hb_002676_110 0.193084469 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase 2-like [Gossypium raimondii]
13 Hb_000692_030 0.1939727693 - - nucleoredoxin, putative [Ricinus communis]
14 Hb_001226_170 0.1942097988 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
15 Hb_082870_010 0.1947998034 - - Disease resistance protein RFL1, putative [Ricinus communis]
16 Hb_002035_030 0.1959231041 - - hypothetical protein PRUPE_ppa003221mg [Prunus persica]
17 Hb_003864_020 0.1960967747 - - kinase, putative [Ricinus communis]
18 Hb_005282_010 0.1963490025 - - PREDICTED: probable xyloglucan glycosyltransferase 12 [Populus euphratica]
19 Hb_010721_010 0.1964014118 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26-like [Populus euphratica]
20 Hb_003633_150 0.1968173515 - - hypothetical protein JCGZ_23296 [Jatropha curcas]

Gene co-expression network

sample Hb_003449_030 Hb_003449_030 Hb_017857_010 Hb_017857_010 Hb_003449_030--Hb_017857_010 Hb_006615_160 Hb_006615_160 Hb_003449_030--Hb_006615_160 Hb_000567_350 Hb_000567_350 Hb_003449_030--Hb_000567_350 Hb_012743_010 Hb_012743_010 Hb_003449_030--Hb_012743_010 Hb_000062_490 Hb_000062_490 Hb_003449_030--Hb_000062_490 Hb_032050_070 Hb_032050_070 Hb_003449_030--Hb_032050_070 Hb_005375_070 Hb_005375_070 Hb_017857_010--Hb_005375_070 Hb_017857_010--Hb_006615_160 Hb_000776_050 Hb_000776_050 Hb_017857_010--Hb_000776_050 Hb_098160_010 Hb_098160_010 Hb_017857_010--Hb_098160_010 Hb_007574_050 Hb_007574_050 Hb_017857_010--Hb_007574_050 Hb_001898_010 Hb_001898_010 Hb_017857_010--Hb_001898_010 Hb_001329_080 Hb_001329_080 Hb_006615_160--Hb_001329_080 Hb_000853_100 Hb_000853_100 Hb_006615_160--Hb_000853_100 Hb_000009_300 Hb_000009_300 Hb_006615_160--Hb_000009_300 Hb_002030_180 Hb_002030_180 Hb_006615_160--Hb_002030_180 Hb_000172_050 Hb_000172_050 Hb_006615_160--Hb_000172_050 Hb_000094_250 Hb_000094_250 Hb_000567_350--Hb_000094_250 Hb_000567_350--Hb_000062_490 Hb_000094_120 Hb_000094_120 Hb_000567_350--Hb_000094_120 Hb_000735_140 Hb_000735_140 Hb_000567_350--Hb_000735_140 Hb_001688_070 Hb_001688_070 Hb_000567_350--Hb_001688_070 Hb_002233_080 Hb_002233_080 Hb_012743_010--Hb_002233_080 Hb_000532_150 Hb_000532_150 Hb_012743_010--Hb_000532_150 Hb_012272_010 Hb_012272_010 Hb_012743_010--Hb_012272_010 Hb_012743_010--Hb_001329_080 Hb_076771_010 Hb_076771_010 Hb_012743_010--Hb_076771_010 Hb_001472_140 Hb_001472_140 Hb_012743_010--Hb_001472_140 Hb_000692_030 Hb_000692_030 Hb_000062_490--Hb_000692_030 Hb_012727_010 Hb_012727_010 Hb_000062_490--Hb_012727_010 Hb_000062_490--Hb_000094_250 Hb_000062_490--Hb_000094_120 Hb_001178_080 Hb_001178_080 Hb_000062_490--Hb_001178_080 Hb_000062_490--Hb_006615_160 Hb_003216_020 Hb_003216_020 Hb_032050_070--Hb_003216_020 Hb_019040_010 Hb_019040_010 Hb_032050_070--Hb_019040_010 Hb_003602_090 Hb_003602_090 Hb_032050_070--Hb_003602_090 Hb_001628_030 Hb_001628_030 Hb_032050_070--Hb_001628_030 Hb_009510_050 Hb_009510_050 Hb_032050_070--Hb_009510_050 Hb_000723_060 Hb_000723_060 Hb_032050_070--Hb_000723_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.83809 42.5976 22.1766 36.8877 0.115851 0.319821
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.335385 0.0439597 4.26518 9.97286 2.5032

CAGE analysis