Hb_003449_070

Information

Type transcription factor
Description TF Family: SNF2
Location Contig3449: 113138-123501
Sequence    

Annotation

kegg
ID rcu:RCOM_1224050
description DNA repair helicase rad5,16, putative (EC:2.7.11.1)
nr
ID XP_002524826.1
description DNA repair helicase rad5,16, putative [Ricinus communis]
swissprot
ID P79051
description ATP-dependent helicase rhp16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rhp16 PE=3 SV=2
trembl
ID B9SFQ7
description DNA repair helicase rad5,16, putative OS=Ricinus communis GN=RCOM_1224050 PE=4 SV=1
Gene Ontology
ID GO:0003677
description helicase protein with ring u-box domain isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35968: 114300-123490
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003449_070 0.0 transcription factor TF Family: SNF2 DNA repair helicase rad5,16, putative [Ricinus communis]
2 Hb_000613_080 0.0698111158 - - PREDICTED: mucin-5AC-like [Nicotiana sylvestris]
3 Hb_000832_220 0.0758090763 - - PREDICTED: uncharacterized protein LOC105641576 isoform X1 [Jatropha curcas]
4 Hb_001617_060 0.0773885641 - - PREDICTED: polyadenylate-binding protein RBP45B isoform X1 [Jatropha curcas]
5 Hb_000088_130 0.081147607 - - hypothetical protein JCGZ_02447 [Jatropha curcas]
6 Hb_000922_370 0.0880278058 - - PREDICTED: uncharacterized protein LOC105640366 [Jatropha curcas]
7 Hb_174821_010 0.0893808278 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 14 [Jatropha curcas]
8 Hb_005321_020 0.0901437618 - - splicing factor-related family protein [Populus trichocarpa]
9 Hb_001913_060 0.0902722115 - - PREDICTED: splicing factor 3B subunit 3-like [Jatropha curcas]
10 Hb_007426_130 0.0906754182 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
11 Hb_004676_010 0.0936231422 - - PREDICTED: pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like [Jatropha curcas]
12 Hb_002400_240 0.0936875 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
13 Hb_000703_150 0.0938023641 - - PREDICTED: F-box/LRR-repeat MAX2 homolog A [Jatropha curcas]
14 Hb_001034_070 0.0938891714 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_000470_070 0.0964314369 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP43-like [Jatropha curcas]
16 Hb_002329_040 0.0964768593 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
17 Hb_000878_180 0.0965367296 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12 isoform X1 [Jatropha curcas]
18 Hb_002111_070 0.0981158448 - - PREDICTED: protein S-acyltransferase 24 [Jatropha curcas]
19 Hb_000836_270 0.0996388904 - - PREDICTED: mitogen-activated protein kinase homolog MMK2 [Jatropha curcas]
20 Hb_003966_030 0.099729009 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X7 [Jatropha curcas]

Gene co-expression network

sample Hb_003449_070 Hb_003449_070 Hb_000613_080 Hb_000613_080 Hb_003449_070--Hb_000613_080 Hb_000832_220 Hb_000832_220 Hb_003449_070--Hb_000832_220 Hb_001617_060 Hb_001617_060 Hb_003449_070--Hb_001617_060 Hb_000088_130 Hb_000088_130 Hb_003449_070--Hb_000088_130 Hb_000922_370 Hb_000922_370 Hb_003449_070--Hb_000922_370 Hb_174821_010 Hb_174821_010 Hb_003449_070--Hb_174821_010 Hb_000613_080--Hb_001617_060 Hb_003966_030 Hb_003966_030 Hb_000613_080--Hb_003966_030 Hb_000613_080--Hb_174821_010 Hb_003044_020 Hb_003044_020 Hb_000613_080--Hb_003044_020 Hb_000613_080--Hb_000922_370 Hb_015099_010 Hb_015099_010 Hb_000832_220--Hb_015099_010 Hb_117552_010 Hb_117552_010 Hb_000832_220--Hb_117552_010 Hb_000375_130 Hb_000375_130 Hb_000832_220--Hb_000375_130 Hb_000832_220--Hb_000613_080 Hb_000832_220--Hb_174821_010 Hb_000470_070 Hb_000470_070 Hb_001617_060--Hb_000470_070 Hb_001617_060--Hb_003966_030 Hb_003362_070 Hb_003362_070 Hb_001617_060--Hb_003362_070 Hb_004102_140 Hb_004102_140 Hb_001617_060--Hb_004102_140 Hb_004935_030 Hb_004935_030 Hb_001617_060--Hb_004935_030 Hb_004627_060 Hb_004627_060 Hb_000088_130--Hb_004627_060 Hb_000088_130--Hb_000375_130 Hb_000088_130--Hb_174821_010 Hb_002107_070 Hb_002107_070 Hb_000088_130--Hb_002107_070 Hb_001454_280 Hb_001454_280 Hb_000088_130--Hb_001454_280 Hb_002301_080 Hb_002301_080 Hb_000088_130--Hb_002301_080 Hb_000922_370--Hb_003044_020 Hb_007426_130 Hb_007426_130 Hb_000922_370--Hb_007426_130 Hb_002329_040 Hb_002329_040 Hb_000922_370--Hb_002329_040 Hb_000922_370--Hb_003362_070 Hb_002174_020 Hb_002174_020 Hb_000922_370--Hb_002174_020 Hb_000160_290 Hb_000160_290 Hb_000922_370--Hb_000160_290 Hb_174821_010--Hb_000470_070 Hb_002078_100 Hb_002078_100 Hb_174821_010--Hb_002078_100 Hb_000648_100 Hb_000648_100 Hb_174821_010--Hb_000648_100 Hb_174821_010--Hb_001617_060 Hb_174821_010--Hb_003966_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.4645 33.5505 16.0349 22.9312 29.1151 47.5073
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.1205 7.87315 28.2525 38.3034 16.9842

CAGE analysis