Hb_003453_010

Information

Type -
Description -
Location Contig3453: 7974-8258
Sequence    

Annotation

kegg
ID rcu:RCOM_1444610
description hypothetical protein
nr
ID XP_002512815.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RGV6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1444610 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003453_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_017895_050 0.0777088731 - - PREDICTED: LOW QUALITY PROTEIN: UPF0160 protein MYG1, mitochondrial [Jatropha curcas]
3 Hb_001437_040 0.0807610172 - - PREDICTED: ATPase GET3-like [Vitis vinifera]
4 Hb_002518_250 0.0914699807 - - conserved hypothetical protein 10 [Hevea brasiliensis]
5 Hb_027892_060 0.0927199257 - - PREDICTED: inter-alpha-trypsin inhibitor heavy chain H3 isoform X1 [Jatropha curcas]
6 Hb_000984_190 0.0935113501 - - -
7 Hb_098709_010 0.0957341228 - - PREDICTED: protein argonaute 1 [Jatropha curcas]
8 Hb_003055_050 0.1020753262 - - hypothetical protein POPTR_0011s04510g [Populus trichocarpa]
9 Hb_003398_060 0.1044729614 - - PREDICTED: rRNA methyltransferase 2, mitochondrial isoform X1 [Jatropha curcas]
10 Hb_005941_010 0.1063843552 - - PREDICTED: protein SAND [Jatropha curcas]
11 Hb_008016_010 0.1069593263 - - PREDICTED: protein LURP-one-related 15-like isoform X1 [Jatropha curcas]
12 Hb_003911_040 0.1079559576 - - PREDICTED: putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Jatropha curcas]
13 Hb_003050_040 0.1084506282 desease resistance Gene Name: AAA Katanin p60 ATPase-containing subunit, putative [Ricinus communis]
14 Hb_009558_020 0.1084764725 - - PREDICTED: E3 ubiquitin-protein ligase PRT6 isoform X1 [Jatropha curcas]
15 Hb_000365_360 0.1090414165 - - PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]
16 Hb_000705_260 0.1102430741 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001369_060 0.1124135526 - - PREDICTED: uncharacterized Rho GTPase-activating protein At5g61530 [Jatropha curcas]
18 Hb_002942_030 0.1125820631 - - hypothetical protein EUGRSUZ_K000651 [Eucalyptus grandis]
19 Hb_002942_020 0.1130385172 - - nucleotide binding protein, putative [Ricinus communis]
20 Hb_003125_040 0.1137513219 - - PREDICTED: uncharacterized protein LOC105640201 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003453_010 Hb_003453_010 Hb_017895_050 Hb_017895_050 Hb_003453_010--Hb_017895_050 Hb_001437_040 Hb_001437_040 Hb_003453_010--Hb_001437_040 Hb_002518_250 Hb_002518_250 Hb_003453_010--Hb_002518_250 Hb_027892_060 Hb_027892_060 Hb_003453_010--Hb_027892_060 Hb_000984_190 Hb_000984_190 Hb_003453_010--Hb_000984_190 Hb_098709_010 Hb_098709_010 Hb_003453_010--Hb_098709_010 Hb_017895_050--Hb_027892_060 Hb_017895_050--Hb_001437_040 Hb_004204_030 Hb_004204_030 Hb_017895_050--Hb_004204_030 Hb_017895_050--Hb_098709_010 Hb_003911_040 Hb_003911_040 Hb_017895_050--Hb_003911_040 Hb_006569_020 Hb_006569_020 Hb_001437_040--Hb_006569_020 Hb_001437_040--Hb_098709_010 Hb_007166_050 Hb_007166_050 Hb_001437_040--Hb_007166_050 Hb_118977_020 Hb_118977_020 Hb_001437_040--Hb_118977_020 Hb_003086_110 Hb_003086_110 Hb_001437_040--Hb_003086_110 Hb_000175_520 Hb_000175_520 Hb_002518_250--Hb_000175_520 Hb_002518_250--Hb_001437_040 Hb_000933_140 Hb_000933_140 Hb_002518_250--Hb_000933_140 Hb_002518_250--Hb_017895_050 Hb_004852_020 Hb_004852_020 Hb_002518_250--Hb_004852_020 Hb_002942_020 Hb_002942_020 Hb_027892_060--Hb_002942_020 Hb_033491_010 Hb_033491_010 Hb_027892_060--Hb_033491_010 Hb_027892_060--Hb_118977_020 Hb_027892_060--Hb_001437_040 Hb_001369_060 Hb_001369_060 Hb_027892_060--Hb_001369_060 Hb_001235_070 Hb_001235_070 Hb_000984_190--Hb_001235_070 Hb_005941_010 Hb_005941_010 Hb_000984_190--Hb_005941_010 Hb_000984_190--Hb_001437_040 Hb_000984_190--Hb_017895_050 Hb_003086_020 Hb_003086_020 Hb_000984_190--Hb_003086_020 Hb_000365_360 Hb_000365_360 Hb_098709_010--Hb_000365_360 Hb_098709_010--Hb_001369_060 Hb_002207_100 Hb_002207_100 Hb_098709_010--Hb_002207_100 Hb_098709_010--Hb_033491_010 Hb_000700_090 Hb_000700_090 Hb_098709_010--Hb_000700_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.9846 2.66542 3.64142 4.73918 28.4675 46.727
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
43.6204 23.6134 14.9239 5.50143 4.54329

CAGE analysis