Hb_003453_020

Information

Type -
Description -
Location Contig3453: 8252-11109
Sequence    

Annotation

kegg
ID pop:POPTR_0001s40210g
description Histidine biosynthesis bifunctional protein hisIE
nr
ID XP_012067380.1
description PREDICTED: histidine biosynthesis bifunctional protein hisIE, chloroplastic [Jatropha curcas]
swissprot
ID O82768
description Histidine biosynthesis bifunctional protein hisIE, chloroplastic OS=Arabidopsis thaliana GN=HISN2 PE=1 SV=1
trembl
ID A0A067L3R8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26891 PE=4 SV=1
Gene Ontology
ID GO:0009570
description histidine biosynthesis bifunctional protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36063: 7840-11273 , PASA_asmbl_36064: 8357-11268
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003453_020 0.0 - - PREDICTED: histidine biosynthesis bifunctional protein hisIE, chloroplastic [Jatropha curcas]
2 Hb_000322_050 0.0614852705 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
3 Hb_004096_170 0.0616763085 - - PREDICTED: uncharacterized protein DDB_G0275933 [Jatropha curcas]
4 Hb_000176_110 0.0632208875 - - PREDICTED: serine--tRNA ligase [Jatropha curcas]
5 Hb_005527_050 0.0658373743 - - PREDICTED: uncharacterized protein LOC105643024 [Jatropha curcas]
6 Hb_000012_090 0.0667141132 - - 3'-5' exonuclease, putative [Ricinus communis]
7 Hb_012305_070 0.0681276704 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000905_190 0.0682059998 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
9 Hb_143629_010 0.0708428175 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
10 Hb_007441_340 0.0727940989 - - protein with unknown function [Ricinus communis]
11 Hb_006922_080 0.0736543716 - - PREDICTED: E3 ubiquitin-protein ligase SINAT3-like [Glycine max]
12 Hb_028639_060 0.0738786041 - - transporter, putative [Ricinus communis]
13 Hb_000236_320 0.0740145103 - - PREDICTED: ER membrane protein complex subunit 8/9 homolog [Jatropha curcas]
14 Hb_000172_120 0.0760346914 - - PREDICTED: uncharacterized protein LOC105650770 isoform X1 [Jatropha curcas]
15 Hb_001741_140 0.0761105308 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
16 Hb_003728_020 0.07701332 - - conserved hypothetical protein [Ricinus communis]
17 Hb_008406_160 0.077746753 - - PREDICTED: ADP,ATP carrier protein 3, mitochondrial [Jatropha curcas]
18 Hb_001014_010 0.0787191156 - - PREDICTED: uncharacterized protein LOC105647311 [Jatropha curcas]
19 Hb_150069_020 0.0806551213 - - PREDICTED: ribosome biogenesis regulatory protein homolog isoform X1 [Jatropha curcas]
20 Hb_003384_030 0.0818940852 - - PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Jatropha curcas]

Gene co-expression network

sample Hb_003453_020 Hb_003453_020 Hb_000322_050 Hb_000322_050 Hb_003453_020--Hb_000322_050 Hb_004096_170 Hb_004096_170 Hb_003453_020--Hb_004096_170 Hb_000176_110 Hb_000176_110 Hb_003453_020--Hb_000176_110 Hb_005527_050 Hb_005527_050 Hb_003453_020--Hb_005527_050 Hb_000012_090 Hb_000012_090 Hb_003453_020--Hb_000012_090 Hb_012305_070 Hb_012305_070 Hb_003453_020--Hb_012305_070 Hb_000322_050--Hb_000012_090 Hb_028639_060 Hb_028639_060 Hb_000322_050--Hb_028639_060 Hb_003728_020 Hb_003728_020 Hb_000322_050--Hb_003728_020 Hb_001221_230 Hb_001221_230 Hb_000322_050--Hb_001221_230 Hb_000032_570 Hb_000032_570 Hb_000322_050--Hb_000032_570 Hb_000847_070 Hb_000847_070 Hb_004096_170--Hb_000847_070 Hb_007441_340 Hb_007441_340 Hb_004096_170--Hb_007441_340 Hb_000172_120 Hb_000172_120 Hb_004096_170--Hb_000172_120 Hb_002044_090 Hb_002044_090 Hb_004096_170--Hb_002044_090 Hb_004813_010 Hb_004813_010 Hb_004096_170--Hb_004813_010 Hb_003352_050 Hb_003352_050 Hb_000176_110--Hb_003352_050 Hb_000176_110--Hb_000012_090 Hb_000003_090 Hb_000003_090 Hb_000176_110--Hb_000003_090 Hb_006922_080 Hb_006922_080 Hb_000176_110--Hb_006922_080 Hb_000077_050 Hb_000077_050 Hb_000176_110--Hb_000077_050 Hb_005527_050--Hb_003728_020 Hb_002272_250 Hb_002272_250 Hb_005527_050--Hb_002272_250 Hb_005928_060 Hb_005928_060 Hb_005527_050--Hb_005928_060 Hb_000905_190 Hb_000905_190 Hb_005527_050--Hb_000905_190 Hb_150069_020 Hb_150069_020 Hb_005527_050--Hb_150069_020 Hb_000012_090--Hb_028639_060 Hb_000012_090--Hb_006922_080 Hb_000012_090--Hb_003728_020 Hb_002014_080 Hb_002014_080 Hb_000012_090--Hb_002014_080 Hb_003602_040 Hb_003602_040 Hb_000012_090--Hb_003602_040 Hb_000684_420 Hb_000684_420 Hb_012305_070--Hb_000684_420 Hb_000645_150 Hb_000645_150 Hb_012305_070--Hb_000645_150 Hb_000186_280 Hb_000186_280 Hb_012305_070--Hb_000186_280 Hb_001014_010 Hb_001014_010 Hb_012305_070--Hb_001014_010 Hb_000236_370 Hb_000236_370 Hb_012305_070--Hb_000236_370 Hb_003384_030 Hb_003384_030 Hb_012305_070--Hb_003384_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
160.102 40.2819 44.8757 31.3103 201.439 177.152
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
140.025 99.9557 75.7988 51.5091 23.6342

CAGE analysis