Hb_003453_030

Information

Type -
Description -
Location Contig3453: 11565-14573
Sequence    

Annotation

kegg
ID vvi:104881640
description uncharacterized LOC104881640
nr
ID KDP41875.1
description hypothetical protein JCGZ_26893 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LBK4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26893 PE=4 SV=1
Gene Ontology
ID GO:0005488
description hypothetical protein JCGZ_26893

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36065: 11859-13584
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003453_030 0.0 - - hypothetical protein JCGZ_26893 [Jatropha curcas]
2 Hb_004195_170 0.0879806619 - - ATP binding protein, putative [Ricinus communis]
3 Hb_001408_050 0.0956407986 - - conserved hypothetical protein [Ricinus communis]
4 Hb_012807_060 0.1097978846 - - ABC transporter family protein [Hevea brasiliensis]
5 Hb_022501_020 0.1104972278 - - AMP dependent CoA ligase, putative [Ricinus communis]
6 Hb_001454_410 0.1175705998 - - PREDICTED: uncharacterized protein LOC105643453 [Jatropha curcas]
7 Hb_009581_050 0.1217592361 - - hypothetical protein CISIN_1g0025812mg, partial [Citrus sinensis]
8 Hb_002551_090 0.1247299396 - - hypothetical protein JCGZ_17224 [Jatropha curcas]
9 Hb_003430_020 0.1299607217 - - PREDICTED: aldehyde dehydrogenase family 2 member B7, mitochondrial-like [Jatropha curcas]
10 Hb_003052_120 0.130598254 - - hypothetical protein POPTR_0008s10970g [Populus trichocarpa]
11 Hb_000579_180 0.1306585482 transcription factor TF Family: bZIP PREDICTED: ocs element-binding factor 1-like [Jatropha curcas]
12 Hb_000407_080 0.1324106339 - - 1-aminocyclopropane-1-carboxylate oxidase [Hevea brasiliensis]
13 Hb_004044_030 0.1334268393 - - PREDICTED: uncharacterized protein LOC105639335 [Jatropha curcas]
14 Hb_004218_160 0.1390356337 - - NBS-LRR type disease resistance protein [Medicago truncatula]
15 Hb_006241_010 0.139344786 desease resistance Gene Name: NB-ARC Disease resistance protein RFL1, putative [Ricinus communis]
16 Hb_008226_120 0.1400075811 - - ATP binding protein, putative [Ricinus communis]
17 Hb_003807_020 0.1409699551 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
18 Hb_008406_020 0.1427964306 - - PREDICTED: probable aminotransferase TAT2 [Jatropha curcas]
19 Hb_000335_050 0.1430264541 - - PREDICTED: CASP-like protein 4A1 isoform X1 [Jatropha curcas]
20 Hb_010174_190 0.1431842741 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR11-like [Jatropha curcas]

Gene co-expression network

sample Hb_003453_030 Hb_003453_030 Hb_004195_170 Hb_004195_170 Hb_003453_030--Hb_004195_170 Hb_001408_050 Hb_001408_050 Hb_003453_030--Hb_001408_050 Hb_012807_060 Hb_012807_060 Hb_003453_030--Hb_012807_060 Hb_022501_020 Hb_022501_020 Hb_003453_030--Hb_022501_020 Hb_001454_410 Hb_001454_410 Hb_003453_030--Hb_001454_410 Hb_009581_050 Hb_009581_050 Hb_003453_030--Hb_009581_050 Hb_000086_370 Hb_000086_370 Hb_004195_170--Hb_000086_370 Hb_004195_170--Hb_012807_060 Hb_004195_170--Hb_022501_020 Hb_000657_030 Hb_000657_030 Hb_004195_170--Hb_000657_030 Hb_004195_170--Hb_001408_050 Hb_009823_010 Hb_009823_010 Hb_001408_050--Hb_009823_010 Hb_000181_160 Hb_000181_160 Hb_001408_050--Hb_000181_160 Hb_001678_030 Hb_001678_030 Hb_001408_050--Hb_001678_030 Hb_003576_050 Hb_003576_050 Hb_001408_050--Hb_003576_050 Hb_000638_090 Hb_000638_090 Hb_001408_050--Hb_000638_090 Hb_012807_060--Hb_009581_050 Hb_003052_120 Hb_003052_120 Hb_012807_060--Hb_003052_120 Hb_002551_090 Hb_002551_090 Hb_012807_060--Hb_002551_090 Hb_000579_180 Hb_000579_180 Hb_012807_060--Hb_000579_180 Hb_003430_020 Hb_003430_020 Hb_012807_060--Hb_003430_020 Hb_008226_120 Hb_008226_120 Hb_012807_060--Hb_008226_120 Hb_006241_010 Hb_006241_010 Hb_022501_020--Hb_006241_010 Hb_022501_020--Hb_012807_060 Hb_022501_020--Hb_002551_090 Hb_004044_030 Hb_004044_030 Hb_022501_020--Hb_004044_030 Hb_006594_060 Hb_006594_060 Hb_022501_020--Hb_006594_060 Hb_001221_480 Hb_001221_480 Hb_001454_410--Hb_001221_480 Hb_001454_410--Hb_000181_160 Hb_008695_130 Hb_008695_130 Hb_001454_410--Hb_008695_130 Hb_003807_020 Hb_003807_020 Hb_001454_410--Hb_003807_020 Hb_001454_410--Hb_001408_050 Hb_000407_080 Hb_000407_080 Hb_009581_050--Hb_000407_080 Hb_002007_140 Hb_002007_140 Hb_009581_050--Hb_002007_140 Hb_009581_050--Hb_003807_020 Hb_000335_050 Hb_000335_050 Hb_009581_050--Hb_000335_050 Hb_009581_050--Hb_003430_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.233194 23.0643 4.34395 11.9692 0.4219 0.486789
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.0254 0.531298 0.744346 27.6295 2.81976

CAGE analysis