Hb_003453_060

Information

Type -
Description -
Location Contig3453: 61389-64207
Sequence    

Annotation

kegg
ID rcu:RCOM_1444060
description diphosphoinositol polyphosphate phosphohydrolase, putative
nr
ID XP_012067385.1
description PREDICTED: nudix hydrolase 13, mitochondrial [Jatropha curcas]
swissprot
ID Q93ZY7
description Nudix hydrolase 12, mitochondrial OS=Arabidopsis thaliana GN=NUDT12 PE=2 SV=1
trembl
ID A0A067L0D1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26895 PE=3 SV=1
Gene Ontology
ID GO:0052841
description nudix hydrolase mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36068: 61593-61949 , PASA_asmbl_36069: 61622-61950
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003453_060 0.0 - - PREDICTED: nudix hydrolase 13, mitochondrial [Jatropha curcas]
2 Hb_005575_010 0.0602303818 - - hypothetical protein POPTR_0004s02560g [Populus trichocarpa]
3 Hb_078582_010 0.0714883109 - - hypothetical protein POPTR_0005s01620g [Populus trichocarpa]
4 Hb_002025_290 0.0838746321 transcription factor TF Family: G2-like conserved hypothetical protein [Ricinus communis]
5 Hb_003043_130 0.0895818273 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF2-like [Jatropha curcas]
6 Hb_001544_060 0.0931378148 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB4 isoform X2 [Jatropha curcas]
7 Hb_003119_130 0.0991090404 - - hypothetical protein POPTR_0017s07770g [Populus trichocarpa]
8 Hb_000252_240 0.0998516945 - - PREDICTED: protein TRANSPARENT TESTA 12-like isoform X2 [Gossypium raimondii]
9 Hb_000947_010 0.1030339291 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
10 Hb_001285_020 0.1094831122 - - UDP-glucosyltransferase, putative [Ricinus communis]
11 Hb_001638_190 0.1140341478 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
12 Hb_001172_150 0.1213471376 desease resistance Gene Name: ABC_membrane PREDICTED: putative ABC transporter C family member 15 [Jatropha curcas]
13 Hb_063405_010 0.1233590655 - - PREDICTED: probable terpene synthase 3 [Jatropha curcas]
14 Hb_000759_040 0.1241559947 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
15 Hb_000175_200 0.1251288269 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000483_430 0.1303099625 - - -
17 Hb_000697_020 0.1316861429 - - Zinc-binding dehydrogenase family protein isoform 1 [Theobroma cacao]
18 Hb_000037_200 0.1317027346 - - RNA binding protein, putative [Ricinus communis]
19 Hb_009102_010 0.131807883 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_003337_020 0.1319921192 - - PREDICTED: uncharacterized protein LOC105116455 [Populus euphratica]

Gene co-expression network

sample Hb_003453_060 Hb_003453_060 Hb_005575_010 Hb_005575_010 Hb_003453_060--Hb_005575_010 Hb_078582_010 Hb_078582_010 Hb_003453_060--Hb_078582_010 Hb_002025_290 Hb_002025_290 Hb_003453_060--Hb_002025_290 Hb_003043_130 Hb_003043_130 Hb_003453_060--Hb_003043_130 Hb_001544_060 Hb_001544_060 Hb_003453_060--Hb_001544_060 Hb_003119_130 Hb_003119_130 Hb_003453_060--Hb_003119_130 Hb_000947_010 Hb_000947_010 Hb_005575_010--Hb_000947_010 Hb_005575_010--Hb_003043_130 Hb_005575_010--Hb_002025_290 Hb_005575_010--Hb_078582_010 Hb_005575_010--Hb_003119_130 Hb_000037_200 Hb_000037_200 Hb_078582_010--Hb_000037_200 Hb_000260_750 Hb_000260_750 Hb_078582_010--Hb_000260_750 Hb_000759_040 Hb_000759_040 Hb_078582_010--Hb_000759_040 Hb_000987_020 Hb_000987_020 Hb_078582_010--Hb_000987_020 Hb_001285_020 Hb_001285_020 Hb_002025_290--Hb_001285_020 Hb_009102_010 Hb_009102_010 Hb_002025_290--Hb_009102_010 Hb_003050_010 Hb_003050_010 Hb_002025_290--Hb_003050_010 Hb_002025_290--Hb_001544_060 Hb_003043_130--Hb_000947_010 Hb_000866_060 Hb_000866_060 Hb_003043_130--Hb_000866_060 Hb_003043_130--Hb_000759_040 Hb_000239_050 Hb_000239_050 Hb_003043_130--Hb_000239_050 Hb_000252_240 Hb_000252_240 Hb_001544_060--Hb_000252_240 Hb_000445_310 Hb_000445_310 Hb_001544_060--Hb_000445_310 Hb_001898_100 Hb_001898_100 Hb_001544_060--Hb_001898_100 Hb_003337_020 Hb_003337_020 Hb_001544_060--Hb_003337_020 Hb_001638_190 Hb_001638_190 Hb_001544_060--Hb_001638_190 Hb_003119_130--Hb_078582_010 Hb_016687_010 Hb_016687_010 Hb_003119_130--Hb_016687_010 Hb_000175_200 Hb_000175_200 Hb_003119_130--Hb_000175_200 Hb_001172_150 Hb_001172_150 Hb_003119_130--Hb_001172_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.82236 19.9767 4.06247 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0340516 0 0 4.18538 14.4116

CAGE analysis