Hb_003462_030

Information

Type -
Description -
Location Contig3462: 30737-34471
Sequence    

Annotation

kegg
ID aly:ARALYDRAFT_318885
description hypothetical protein
nr
ID AEW09338.1
description hypothetical protein UMN_5210_01, partial [Pinus radiata]
swissprot
ID P52332
description Tyrosine-protein kinase JAK1 OS=Mus musculus GN=Jak1 PE=1 SV=1
trembl
ID H9MDZ1
description Uncharacterized protein (Fragment) OS=Pinus radiata GN=UMN_5210_01 PE=4 SV=1
Gene Ontology
ID GO:0016301
description probable receptor-like protein kinase at5g47070

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36098: 33410-34524
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003462_030 0.0 - - hypothetical protein UMN_5210_01, partial [Pinus radiata]
2 Hb_001767_100 0.1386342855 - - cation efflux protein/ zinc transporter, putative [Ricinus communis]
3 Hb_000771_110 0.1409816461 - - protein phosphatase 2C [Hevea brasiliensis]
4 Hb_001584_330 0.1469516273 - - PREDICTED: shaggy-related protein kinase alpha [Jatropha curcas]
5 Hb_082609_020 0.1483834623 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002249_140 0.1487363113 - - PREDICTED: uncharacterized protein LOC105648715 [Jatropha curcas]
7 Hb_000085_240 0.1493454803 - - fimbrin, putative [Ricinus communis]
8 Hb_171284_010 0.1500178634 - - -
9 Hb_001386_120 0.1500364956 - - PREDICTED: yrdC domain-containing protein, mitochondrial [Jatropha curcas]
10 Hb_004722_060 0.1504906321 - - PREDICTED: protein CLP1 homolog [Jatropha curcas]
11 Hb_001623_420 0.1509122755 - - nucleotide binding protein, putative [Ricinus communis]
12 Hb_000138_040 0.1566911763 - - PREDICTED: uncharacterized protein LOC105646531 [Jatropha curcas]
13 Hb_021254_030 0.1576186472 - - PREDICTED: mitochondrial substrate carrier family protein P [Jatropha curcas]
14 Hb_000621_080 0.157839744 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005914_230 0.1581305838 - - PREDICTED: pre-mRNA-processing factor 19 homolog 1 [Jatropha curcas]
16 Hb_000592_050 0.1582988752 - - PREDICTED: golgin candidate 2 [Jatropha curcas]
17 Hb_008725_250 0.1587228399 - - PREDICTED: phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial [Jatropha curcas]
18 Hb_000172_400 0.1591961276 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
19 Hb_002207_100 0.1608093564 - - PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Jatropha curcas]
20 Hb_010381_070 0.1616385874 - - PREDICTED: protein STU1-like [Jatropha curcas]

Gene co-expression network

sample Hb_003462_030 Hb_003462_030 Hb_001767_100 Hb_001767_100 Hb_003462_030--Hb_001767_100 Hb_000771_110 Hb_000771_110 Hb_003462_030--Hb_000771_110 Hb_001584_330 Hb_001584_330 Hb_003462_030--Hb_001584_330 Hb_082609_020 Hb_082609_020 Hb_003462_030--Hb_082609_020 Hb_002249_140 Hb_002249_140 Hb_003462_030--Hb_002249_140 Hb_000085_240 Hb_000085_240 Hb_003462_030--Hb_000085_240 Hb_006824_020 Hb_006824_020 Hb_001767_100--Hb_006824_020 Hb_001767_100--Hb_002249_140 Hb_157854_010 Hb_157854_010 Hb_001767_100--Hb_157854_010 Hb_000732_260 Hb_000732_260 Hb_001767_100--Hb_000732_260 Hb_004012_010 Hb_004012_010 Hb_001767_100--Hb_004012_010 Hb_002762_060 Hb_002762_060 Hb_001767_100--Hb_002762_060 Hb_000771_110--Hb_002249_140 Hb_000107_390 Hb_000107_390 Hb_000771_110--Hb_000107_390 Hb_001001_160 Hb_001001_160 Hb_000771_110--Hb_001001_160 Hb_000001_020 Hb_000001_020 Hb_000771_110--Hb_000001_020 Hb_000481_010 Hb_000481_010 Hb_000771_110--Hb_000481_010 Hb_000025_200 Hb_000025_200 Hb_000771_110--Hb_000025_200 Hb_001623_420 Hb_001623_420 Hb_001584_330--Hb_001623_420 Hb_005306_110 Hb_005306_110 Hb_001584_330--Hb_005306_110 Hb_004812_010 Hb_004812_010 Hb_001584_330--Hb_004812_010 Hb_006400_040 Hb_006400_040 Hb_001584_330--Hb_006400_040 Hb_000120_950 Hb_000120_950 Hb_001584_330--Hb_000120_950 Hb_000139_410 Hb_000139_410 Hb_001584_330--Hb_000139_410 Hb_000418_100 Hb_000418_100 Hb_082609_020--Hb_000418_100 Hb_082609_020--Hb_001584_330 Hb_003777_330 Hb_003777_330 Hb_082609_020--Hb_003777_330 Hb_012634_010 Hb_012634_010 Hb_082609_020--Hb_012634_010 Hb_009838_100 Hb_009838_100 Hb_082609_020--Hb_009838_100 Hb_000062_240 Hb_000062_240 Hb_082609_020--Hb_000062_240 Hb_008725_250 Hb_008725_250 Hb_002249_140--Hb_008725_250 Hb_002249_140--Hb_000732_260 Hb_002044_090 Hb_002044_090 Hb_002249_140--Hb_002044_090 Hb_002249_140--Hb_000481_010 Hb_000784_090 Hb_000784_090 Hb_002249_140--Hb_000784_090 Hb_000666_110 Hb_000666_110 Hb_000085_240--Hb_000666_110 Hb_007164_020 Hb_007164_020 Hb_000085_240--Hb_007164_020 Hb_001504_150 Hb_001504_150 Hb_000085_240--Hb_001504_150 Hb_000621_080 Hb_000621_080 Hb_000085_240--Hb_000621_080 Hb_019962_030 Hb_019962_030 Hb_000085_240--Hb_019962_030 Hb_001439_150 Hb_001439_150 Hb_000085_240--Hb_001439_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.63145 0.889266 0.666377 0.163935 1.86614 1.22395
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.57221 0.872911 1.68144 0.627871 0

CAGE analysis