Hb_003462_110

Information

Type -
Description -
Location Contig3462: 119790-120686
Sequence    

Annotation

kegg
ID rcu:RCOM_0481320
description hevamine-A precursor, putative (EC:3.2.1.17)
nr
ID XP_002530928.1
description hevamine-A precursor, putative [Ricinus communis]
swissprot
ID P29060
description Acidic endochitinase OS=Nicotiana tabacum PE=1 SV=1
trembl
ID F6I675
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0046g01710 PE=3 SV=1
Gene Ontology
ID GO:0003796
description chitinase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36115: 119687-120210
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003462_110 0.0 - - hevamine-A precursor, putative [Ricinus communis]
2 Hb_009661_030 0.1081785664 - - PREDICTED: SPX and EXS domain-containing protein 1-like [Jatropha curcas]
3 Hb_003878_200 0.1125233109 - - PREDICTED: V-type proton ATPase subunit D-like [Jatropha curcas]
4 Hb_000638_070 0.1187466044 - - PREDICTED: protein trichome birefringence-like 14 [Jatropha curcas]
5 Hb_011486_060 0.1261216789 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000390_050 0.1273757577 - - PREDICTED: GPCR-type G protein 1 [Jatropha curcas]
7 Hb_000014_040 0.1276563327 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001051_050 0.12883914 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001104_130 0.1290639232 - - C-14 sterol reductase, putative [Ricinus communis]
10 Hb_020390_010 0.1325565156 - - PREDICTED: expansin-A13 [Jatropha curcas]
11 Hb_004881_030 0.133274598 - - PREDICTED: uncharacterized protein LOC105629532 isoform X1 [Jatropha curcas]
12 Hb_007765_040 0.1361543715 - - Cytosolic enolase isoform 3 [Theobroma cacao]
13 Hb_004126_040 0.136767649 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000107_110 0.1372387065 - - nucleic acid binding protein, putative [Ricinus communis]
15 Hb_002902_130 0.1373221664 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
16 Hb_000665_190 0.1417461912 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000389_030 0.1418639743 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B [Jatropha curcas]
18 Hb_012339_010 0.1419927076 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000359_310 0.1421078734 - - hypothetical protein JCGZ_03934 [Jatropha curcas]
20 Hb_000645_280 0.1423128054 - - PREDICTED: AMSH-like ubiquitin thioesterase 3 [Jatropha curcas]

Gene co-expression network

sample Hb_003462_110 Hb_003462_110 Hb_009661_030 Hb_009661_030 Hb_003462_110--Hb_009661_030 Hb_003878_200 Hb_003878_200 Hb_003462_110--Hb_003878_200 Hb_000638_070 Hb_000638_070 Hb_003462_110--Hb_000638_070 Hb_011486_060 Hb_011486_060 Hb_003462_110--Hb_011486_060 Hb_000390_050 Hb_000390_050 Hb_003462_110--Hb_000390_050 Hb_000014_040 Hb_000014_040 Hb_003462_110--Hb_000014_040 Hb_000359_310 Hb_000359_310 Hb_009661_030--Hb_000359_310 Hb_005800_030 Hb_005800_030 Hb_009661_030--Hb_005800_030 Hb_001104_130 Hb_001104_130 Hb_009661_030--Hb_001104_130 Hb_004129_140 Hb_004129_140 Hb_009661_030--Hb_004129_140 Hb_009661_030--Hb_003878_200 Hb_019181_030 Hb_019181_030 Hb_009661_030--Hb_019181_030 Hb_000389_030 Hb_000389_030 Hb_003878_200--Hb_000389_030 Hb_004126_040 Hb_004126_040 Hb_003878_200--Hb_004126_040 Hb_000665_170 Hb_000665_170 Hb_003878_200--Hb_000665_170 Hb_000256_230 Hb_000256_230 Hb_003878_200--Hb_000256_230 Hb_002928_090 Hb_002928_090 Hb_003878_200--Hb_002928_090 Hb_003998_040 Hb_003998_040 Hb_003878_200--Hb_003998_040 Hb_000665_180 Hb_000665_180 Hb_000638_070--Hb_000665_180 Hb_000638_070--Hb_011486_060 Hb_001976_030 Hb_001976_030 Hb_000638_070--Hb_001976_030 Hb_001663_040 Hb_001663_040 Hb_000638_070--Hb_001663_040 Hb_000395_110 Hb_000395_110 Hb_000638_070--Hb_000395_110 Hb_000417_390 Hb_000417_390 Hb_000638_070--Hb_000417_390 Hb_003058_100 Hb_003058_100 Hb_011486_060--Hb_003058_100 Hb_002740_080 Hb_002740_080 Hb_011486_060--Hb_002740_080 Hb_000012_080 Hb_000012_080 Hb_011486_060--Hb_000012_080 Hb_000057_110 Hb_000057_110 Hb_011486_060--Hb_000057_110 Hb_011486_060--Hb_000389_030 Hb_007765_040 Hb_007765_040 Hb_000390_050--Hb_007765_040 Hb_000390_050--Hb_000417_390 Hb_003097_140 Hb_003097_140 Hb_000390_050--Hb_003097_140 Hb_007416_210 Hb_007416_210 Hb_000390_050--Hb_007416_210 Hb_000390_050--Hb_002928_090 Hb_002902_130 Hb_002902_130 Hb_000390_050--Hb_002902_130 Hb_000014_040--Hb_002928_090 Hb_001051_050 Hb_001051_050 Hb_000014_040--Hb_001051_050 Hb_000014_040--Hb_000390_050 Hb_170138_010 Hb_170138_010 Hb_000014_040--Hb_170138_010 Hb_000399_060 Hb_000399_060 Hb_000014_040--Hb_000399_060 Hb_000684_210 Hb_000684_210 Hb_000014_040--Hb_000684_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.646398 0.432397 1.2995 4.10952 1.35646 0.776859
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.63947 1.55437 0.751481 1.05095 2.31847

CAGE analysis