Hb_003462_120

Information

Type -
Description -
Location Contig3462: 126070-126963
Sequence    

Annotation

kegg
ID tcc:TCM_045283
description Acidic endochitinase
nr
ID XP_007011082.1
description Acidic endochitinase [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061FT38
description Acidic endochitinase OS=Theobroma cacao GN=TCM_045283 PE=3 SV=1
Gene Ontology
ID GO:0003796
description chitinase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36117: 122744-126952 , PASA_asmbl_36118: 122703-127110
cDNA
(Sanger)
(ID:Location)		 028_N09.ab1: 125038-125744 , 048_I11.ab1: 122703-126478

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003462_120 0.0 - - Acidic endochitinase [Theobroma cacao]
2 Hb_001481_140 0.0793837428 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
3 Hb_005137_060 0.0798929698 - - -
4 Hb_004672_010 0.0850093455 - - ecotropic viral integration site, putative [Ricinus communis]
5 Hb_000175_030 0.0871179822 - - Signal recognition particle, SRP54 subunit protein [Theobroma cacao]
6 Hb_000934_190 0.087368761 - - SER/ARG-rich protein 34A [Theobroma cacao]
7 Hb_003783_030 0.096113402 - - hypothetical protein POPTR_0018s13980g [Populus trichocarpa]
8 Hb_007192_100 0.0967702366 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 6-like [Jatropha curcas]
9 Hb_001519_030 0.0983370032 - - PREDICTED: protein trichome birefringence-like 12 isoform X1 [Jatropha curcas]
10 Hb_000673_020 0.0989132791 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]
11 Hb_001005_080 0.0994988602 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
12 Hb_004705_120 0.1005928866 - - ATP binding protein, putative [Ricinus communis]
13 Hb_002660_070 0.1012602328 - - PREDICTED: gamma carbonic anhydrase 1, mitochondrial [Eucalyptus grandis]
14 Hb_000417_260 0.103842114 - - protein with unknown function [Ricinus communis]
15 Hb_002016_080 0.1047108635 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
16 Hb_008616_070 0.1091543326 - - PREDICTED: trafficking protein particle complex subunit 8 isoform X1 [Jatropha curcas]
17 Hb_015778_010 0.1102347312 - - PREDICTED: AMSH-like ubiquitin thioesterase 1 [Jatropha curcas]
18 Hb_004837_160 0.1118675779 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Jatropha curcas]
19 Hb_011021_040 0.1127001104 transcription factor TF Family: Trihelix PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH9 [Jatropha curcas]
20 Hb_002007_210 0.1141633194 - - PREDICTED: sucrose nonfermenting 4-like protein isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_003462_120 Hb_003462_120 Hb_001481_140 Hb_001481_140 Hb_003462_120--Hb_001481_140 Hb_005137_060 Hb_005137_060 Hb_003462_120--Hb_005137_060 Hb_004672_010 Hb_004672_010 Hb_003462_120--Hb_004672_010 Hb_000175_030 Hb_000175_030 Hb_003462_120--Hb_000175_030 Hb_000934_190 Hb_000934_190 Hb_003462_120--Hb_000934_190 Hb_003783_030 Hb_003783_030 Hb_003462_120--Hb_003783_030 Hb_001519_030 Hb_001519_030 Hb_001481_140--Hb_001519_030 Hb_001005_080 Hb_001005_080 Hb_001481_140--Hb_001005_080 Hb_000417_260 Hb_000417_260 Hb_001481_140--Hb_000417_260 Hb_001481_140--Hb_004672_010 Hb_001008_090 Hb_001008_090 Hb_001481_140--Hb_001008_090 Hb_005137_060--Hb_004672_010 Hb_005137_060--Hb_001005_080 Hb_005137_060--Hb_001481_140 Hb_001222_080 Hb_001222_080 Hb_005137_060--Hb_001222_080 Hb_000922_040 Hb_000922_040 Hb_005137_060--Hb_000922_040 Hb_004672_010--Hb_000417_260 Hb_000046_350 Hb_000046_350 Hb_004672_010--Hb_000046_350 Hb_008232_010 Hb_008232_010 Hb_004672_010--Hb_008232_010 Hb_000072_180 Hb_000072_180 Hb_004672_010--Hb_000072_180 Hb_027654_050 Hb_027654_050 Hb_004672_010--Hb_027654_050 Hb_000673_020 Hb_000673_020 Hb_000175_030--Hb_000673_020 Hb_161175_010 Hb_161175_010 Hb_000175_030--Hb_161175_010 Hb_011021_040 Hb_011021_040 Hb_000175_030--Hb_011021_040 Hb_003880_030 Hb_003880_030 Hb_000175_030--Hb_003880_030 Hb_007192_100 Hb_007192_100 Hb_000175_030--Hb_007192_100 Hb_003622_040 Hb_003622_040 Hb_000934_190--Hb_003622_040 Hb_000934_190--Hb_000673_020 Hb_005098_030 Hb_005098_030 Hb_000934_190--Hb_005098_030 Hb_000934_190--Hb_008232_010 Hb_000982_080 Hb_000982_080 Hb_000934_190--Hb_000982_080 Hb_013405_140 Hb_013405_140 Hb_003783_030--Hb_013405_140 Hb_002016_080 Hb_002016_080 Hb_003783_030--Hb_002016_080 Hb_007037_020 Hb_007037_020 Hb_003783_030--Hb_007037_020 Hb_003783_030--Hb_000673_020 Hb_003783_030--Hb_001481_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.03511 8.20593 7.90206 15.174 4.66749 6.45902
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.9883 23.9209 30.4322 14.9446 8.00756

CAGE analysis