Hb_003462_150

Information

Type -
Description -
Location Contig3462: 152526-160147
Sequence    

Annotation

kegg
ID egr:104443397
description chitinase 1-like
nr
ID XP_010055072.1
description PREDICTED: chitinase 1-like [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID A0A061E0P1
description Hevamine-A OS=Theobroma cacao GN=TCM_005236 PE=3 SV=1
Gene Ontology
ID GO:0003796
description hevamine-a precursor

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36121: 155597-181554
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003462_150 0.0 - - PREDICTED: chitinase 1-like [Eucalyptus grandis]
2 Hb_004544_080 0.0045116984 - - lectin protein kinase [Populus trichocarpa]
3 Hb_000141_230 0.0192217823 - - PREDICTED: 14 kDa proline-rich protein DC2.15-like [Camelina sativa]
4 Hb_000608_080 0.0421718998 - - hypothetical protein JCGZ_22216 [Jatropha curcas]
5 Hb_002999_090 0.0499709932 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002556_020 0.0690179099 - - hypothetical protein JCGZ_12588 [Jatropha curcas]
7 Hb_002475_020 0.0724567473 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 isoform X1 [Populus euphratica]
8 Hb_000302_060 0.0752419266 - - unnamed protein product [Vitis vinifera]
9 Hb_001901_010 0.0818616523 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
10 Hb_001971_070 0.0948151878 - - unnamed protein product [Coffea canephora]
11 Hb_002204_030 0.1020142341 - - PREDICTED: uncharacterized protein LOC105764710 isoform X3 [Gossypium raimondii]
12 Hb_166813_010 0.1020439742 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
13 Hb_009515_010 0.103061479 transcription factor TF Family: HB hypothetical protein JCGZ_15302 [Jatropha curcas]
14 Hb_006153_200 0.1075108891 - - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Theobroma cacao]
15 Hb_000951_030 0.107760803 - - kinase, putative [Ricinus communis]
16 Hb_031340_030 0.1159739826 - - PREDICTED: L-type lectin-domain containing receptor kinase IV.1 [Jatropha curcas]
17 Hb_164162_020 0.121909831 - - PREDICTED: uncharacterized protein LOC105646964 [Jatropha curcas]
18 Hb_005228_170 0.1219659203 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
19 Hb_000948_070 0.1236308143 - - hypothetical protein POPTR_0016s01720g [Populus trichocarpa]
20 Hb_005218_070 0.1267302305 transcription factor TF Family: MYB PREDICTED: transcription factor RAX3 isoform X2 [Populus euphratica]

Gene co-expression network

sample Hb_003462_150 Hb_003462_150 Hb_004544_080 Hb_004544_080 Hb_003462_150--Hb_004544_080 Hb_000141_230 Hb_000141_230 Hb_003462_150--Hb_000141_230 Hb_000608_080 Hb_000608_080 Hb_003462_150--Hb_000608_080 Hb_002999_090 Hb_002999_090 Hb_003462_150--Hb_002999_090 Hb_002556_020 Hb_002556_020 Hb_003462_150--Hb_002556_020 Hb_002475_020 Hb_002475_020 Hb_003462_150--Hb_002475_020 Hb_004544_080--Hb_000141_230 Hb_004544_080--Hb_000608_080 Hb_004544_080--Hb_002999_090 Hb_004544_080--Hb_002556_020 Hb_004544_080--Hb_002475_020 Hb_000141_230--Hb_000608_080 Hb_000302_060 Hb_000302_060 Hb_000141_230--Hb_000302_060 Hb_000141_230--Hb_002999_090 Hb_000141_230--Hb_002556_020 Hb_000608_080--Hb_000302_060 Hb_009515_010 Hb_009515_010 Hb_000608_080--Hb_009515_010 Hb_000608_080--Hb_002999_090 Hb_002999_090--Hb_002556_020 Hb_001901_010 Hb_001901_010 Hb_002999_090--Hb_001901_010 Hb_002999_090--Hb_002475_020 Hb_000951_030 Hb_000951_030 Hb_002556_020--Hb_000951_030 Hb_002556_020--Hb_002475_020 Hb_002556_020--Hb_000302_060 Hb_002475_020--Hb_000141_230 Hb_002475_020--Hb_000302_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00959875 0 0.00906347 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0414147 0

CAGE analysis