Hb_003462_160

Information

Type transcription factor
Description TF Family: GNAT
Location Contig3462: 155798-164075
Sequence    

Annotation

kegg
ID aly:ARALYDRAFT_655315
description hypothetical protein
nr
ID XP_002862906.1
description predicted protein [Arabidopsis lyrata subsp. lyrata]
swissprot
ID P79081
description N-acetyltransferase ats1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ats1 PE=2 SV=1
trembl
ID D7MWB3
description Predicted protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_655315 PE=4 SV=1
Gene Ontology
ID GO:0008080
description probable acetyltransferase nata1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36120: 155597-156534 , PASA_asmbl_36122: 155583-181666
cDNA
(Sanger)
(ID:Location)		 034_B15.ab1: 155749-156534

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003462_160 0.0 transcription factor TF Family: GNAT predicted protein [Arabidopsis lyrata subsp. lyrata]
2 Hb_001558_080 0.1229646487 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_001252_220 0.1240856788 - - PREDICTED: uncharacterized protein LOC105640647 [Jatropha curcas]
4 Hb_002060_010 0.1307219221 - - PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]
5 Hb_002260_010 0.131383231 - - PREDICTED: coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial [Sesamum indicum]
6 Hb_000155_160 0.1357884069 - - hypothetical protein POPTR_0011s05880g [Populus trichocarpa]
7 Hb_006256_030 0.1379635792 - - PREDICTED: putative cyclic nucleotide-gated ion channel 18 [Jatropha curcas]
8 Hb_000139_470 0.1406419812 - - Dual specificity protein phosphatase, putative [Ricinus communis]
9 Hb_000392_550 0.1419923786 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 6, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_044653_040 0.1420904227 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 11 [Jatropha curcas]
11 Hb_003020_150 0.143105151 - - tropinone reductase, putative [Ricinus communis]
12 Hb_000465_070 0.144414983 - - PREDICTED: 3-isopropylmalate dehydratase small subunit 3-like [Jatropha curcas]
13 Hb_007894_050 0.1455497321 - - PREDICTED: reactive Intermediate Deaminase A, chloroplastic [Jatropha curcas]
14 Hb_003669_020 0.1461640465 - - PREDICTED: high mobility group nucleosome-binding domain-containing protein 5 [Populus euphratica]
15 Hb_000164_100 0.1462111946 - - PREDICTED: probable histone H2A.1 [Jatropha curcas]
16 Hb_098315_020 0.1463723634 - - hypothetical protein M569_15712 [Genlisea aurea]
17 Hb_000005_300 0.1474747056 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002028_090 0.1479956355 - - PREDICTED: E3 ubiquitin-protein ligase AIP2-like [Jatropha curcas]
19 Hb_002239_050 0.1480231978 - - PREDICTED: isovaleryl-CoA dehydrogenase, mitochondrial [Jatropha curcas]
20 Hb_005843_140 0.1483775536 - - Red chlorophyll catabolite reductase, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_003462_160 Hb_003462_160 Hb_001558_080 Hb_001558_080 Hb_003462_160--Hb_001558_080 Hb_001252_220 Hb_001252_220 Hb_003462_160--Hb_001252_220 Hb_002060_010 Hb_002060_010 Hb_003462_160--Hb_002060_010 Hb_002260_010 Hb_002260_010 Hb_003462_160--Hb_002260_010 Hb_000155_160 Hb_000155_160 Hb_003462_160--Hb_000155_160 Hb_006256_030 Hb_006256_030 Hb_003462_160--Hb_006256_030 Hb_006846_150 Hb_006846_150 Hb_001558_080--Hb_006846_150 Hb_044653_040 Hb_044653_040 Hb_001558_080--Hb_044653_040 Hb_000811_070 Hb_000811_070 Hb_001558_080--Hb_000811_070 Hb_011689_120 Hb_011689_120 Hb_001558_080--Hb_011689_120 Hb_000487_260 Hb_000487_260 Hb_001558_080--Hb_000487_260 Hb_001900_140 Hb_001900_140 Hb_001558_080--Hb_001900_140 Hb_001252_220--Hb_002260_010 Hb_012022_140 Hb_012022_140 Hb_001252_220--Hb_012022_140 Hb_004057_010 Hb_004057_010 Hb_001252_220--Hb_004057_010 Hb_024074_010 Hb_024074_010 Hb_001252_220--Hb_024074_010 Hb_000005_300 Hb_000005_300 Hb_001252_220--Hb_000005_300 Hb_003020_150 Hb_003020_150 Hb_001252_220--Hb_003020_150 Hb_001718_030 Hb_001718_030 Hb_002060_010--Hb_001718_030 Hb_001188_030 Hb_001188_030 Hb_002060_010--Hb_001188_030 Hb_002060_010--Hb_006256_030 Hb_098315_020 Hb_098315_020 Hb_002060_010--Hb_098315_020 Hb_006355_040 Hb_006355_040 Hb_002060_010--Hb_006355_040 Hb_000327_380 Hb_000327_380 Hb_002060_010--Hb_000327_380 Hb_002260_010--Hb_024074_010 Hb_002260_010--Hb_006256_030 Hb_002260_010--Hb_003020_150 Hb_000731_190 Hb_000731_190 Hb_002260_010--Hb_000731_190 Hb_001493_050 Hb_001493_050 Hb_002260_010--Hb_001493_050 Hb_000419_020 Hb_000419_020 Hb_000155_160--Hb_000419_020 Hb_000085_350 Hb_000085_350 Hb_000155_160--Hb_000085_350 Hb_007747_050 Hb_007747_050 Hb_000155_160--Hb_007747_050 Hb_000847_060 Hb_000847_060 Hb_000155_160--Hb_000847_060 Hb_001863_430 Hb_001863_430 Hb_000155_160--Hb_001863_430 Hb_000327_230 Hb_000327_230 Hb_000155_160--Hb_000327_230 Hb_163256_020 Hb_163256_020 Hb_006256_030--Hb_163256_020 Hb_022318_020 Hb_022318_020 Hb_006256_030--Hb_022318_020 Hb_158445_010 Hb_158445_010 Hb_006256_030--Hb_158445_010 Hb_006256_030--Hb_001718_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.351622 1.15716 2.15045 1.47079 0.32566 0.254708
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.92107 3.65453 1.02844 0.944581 1.83162

CAGE analysis