Hb_003462_170

Information

Type -
Description -
Location Contig3462: 172027-179117
Sequence    

Annotation

kegg
ID pop:POPTR_0014s08870g
description POPTRDRAFT_572335; hypothetical protein
nr
ID CBI40452.3
description unnamed protein product [Vitis vinifera]
swissprot
ID -
description -
trembl
ID M8CY16
description Uncharacterized protein OS=Aegilops tauschii GN=F775_15115 PE=4 SV=1
Gene Ontology
ID GO:0004553
description hevamine-a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36121: 155597-181554
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003462_170 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_001699_020 0.1207361216 - - hypothetical protein L484_026849 [Morus notabilis]
3 Hb_005843_060 0.1287032392 - - PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X3 [Nelumbo nucifera]
4 Hb_125116_020 0.1306281864 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X5 [Populus euphratica]
5 Hb_006455_020 0.1326126644 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
6 Hb_001981_020 0.1355979305 - - PREDICTED: xanthine dehydrogenase 1-like isoform X1 [Populus euphratica]
7 Hb_000644_020 0.142159219 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
8 Hb_170878_020 0.142362713 - - -
9 Hb_057716_010 0.1481819579 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
10 Hb_094484_010 0.1518810579 - - kinase, putative [Ricinus communis]
11 Hb_000567_270 0.1551161767 - - hypothetical protein L484_017162 [Morus notabilis]
12 Hb_062192_050 0.1592650444 - - -
13 Hb_010964_030 0.1642899032 - - PREDICTED: uncharacterized protein LOC105647958 [Jatropha curcas]
14 Hb_003030_050 0.1713949644 - - -
15 Hb_030987_010 0.173701934 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
16 Hb_007533_050 0.1759002718 - - -
17 Hb_000907_130 0.1786999666 - - -
18 Hb_032016_010 0.1823958181 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040-like isoform X1 [Citrus sinensis]
19 Hb_049285_010 0.1838561925 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
20 Hb_003073_030 0.1839937182 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003462_170 Hb_003462_170 Hb_001699_020 Hb_001699_020 Hb_003462_170--Hb_001699_020 Hb_005843_060 Hb_005843_060 Hb_003462_170--Hb_005843_060 Hb_125116_020 Hb_125116_020 Hb_003462_170--Hb_125116_020 Hb_006455_020 Hb_006455_020 Hb_003462_170--Hb_006455_020 Hb_001981_020 Hb_001981_020 Hb_003462_170--Hb_001981_020 Hb_000644_020 Hb_000644_020 Hb_003462_170--Hb_000644_020 Hb_002876_100 Hb_002876_100 Hb_001699_020--Hb_002876_100 Hb_007632_140 Hb_007632_140 Hb_001699_020--Hb_007632_140 Hb_027654_010 Hb_027654_010 Hb_001699_020--Hb_027654_010 Hb_019135_010 Hb_019135_010 Hb_001699_020--Hb_019135_010 Hb_015817_010 Hb_015817_010 Hb_001699_020--Hb_015817_010 Hb_005843_060--Hb_125116_020 Hb_016835_020 Hb_016835_020 Hb_005843_060--Hb_016835_020 Hb_167457_010 Hb_167457_010 Hb_005843_060--Hb_167457_010 Hb_003186_050 Hb_003186_050 Hb_005843_060--Hb_003186_050 Hb_029727_010 Hb_029727_010 Hb_005843_060--Hb_029727_010 Hb_010964_030 Hb_010964_030 Hb_125116_020--Hb_010964_030 Hb_125116_020--Hb_001981_020 Hb_125116_020--Hb_167457_010 Hb_004052_060 Hb_004052_060 Hb_125116_020--Hb_004052_060 Hb_020831_070 Hb_020831_070 Hb_006455_020--Hb_020831_070 Hb_000476_030 Hb_000476_030 Hb_006455_020--Hb_000476_030 Hb_005678_030 Hb_005678_030 Hb_006455_020--Hb_005678_030 Hb_006455_020--Hb_000644_020 Hb_000522_030 Hb_000522_030 Hb_006455_020--Hb_000522_030 Hb_007533_050 Hb_007533_050 Hb_006455_020--Hb_007533_050 Hb_001981_020--Hb_010964_030 Hb_030987_010 Hb_030987_010 Hb_001981_020--Hb_030987_010 Hb_062192_050 Hb_062192_050 Hb_001981_020--Hb_062192_050 Hb_000907_050 Hb_000907_050 Hb_001981_020--Hb_000907_050 Hb_170878_020 Hb_170878_020 Hb_000644_020--Hb_170878_020 Hb_032016_010 Hb_032016_010 Hb_000644_020--Hb_032016_010 Hb_000567_270 Hb_000567_270 Hb_000644_020--Hb_000567_270 Hb_040245_010 Hb_040245_010 Hb_000644_020--Hb_040245_010 Hb_003073_030 Hb_003073_030 Hb_000644_020--Hb_003073_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0223852 0.0276897 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0870984 0.323525

CAGE analysis