Hb_003463_040

Information

Type -
Description -
Location Contig3463: 99429-100696
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003463_040 0.0 - - -
2 Hb_162933_010 0.0024406692 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
3 Hb_028105_020 0.003628803 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
4 Hb_003694_070 0.0044777064 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
5 Hb_007111_020 0.0086363045 - - PREDICTED: uncharacterized protein LOC105793230 [Gossypium raimondii]
6 Hb_024128_010 0.0114492344 - - PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]
7 Hb_139518_020 0.013520683 - - multidrug resistance pump, putative [Ricinus communis]
8 Hb_002417_040 0.0145818338 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
9 Hb_017279_030 0.0148446136 - - -
10 Hb_047623_010 0.0161664906 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
11 Hb_013874_010 0.0181556743 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
12 Hb_171554_060 0.0183328417 - - PREDICTED: uncharacterized protein LOC102627687 [Citrus sinensis]
13 Hb_011114_050 0.020791149 - - -
14 Hb_003401_040 0.0248827369 - - Benzoate carboxyl methyltransferase, putative [Ricinus communis]
15 Hb_019299_040 0.026674653 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor ABI3 [Jatropha curcas]
16 Hb_053575_010 0.0290488304 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
17 Hb_086455_010 0.031740403 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
18 Hb_002628_030 0.0328369058 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_016671_020 0.034547003 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_014115_020 0.0348701952 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_003463_040 Hb_003463_040 Hb_162933_010 Hb_162933_010 Hb_003463_040--Hb_162933_010 Hb_028105_020 Hb_028105_020 Hb_003463_040--Hb_028105_020 Hb_003694_070 Hb_003694_070 Hb_003463_040--Hb_003694_070 Hb_007111_020 Hb_007111_020 Hb_003463_040--Hb_007111_020 Hb_024128_010 Hb_024128_010 Hb_003463_040--Hb_024128_010 Hb_139518_020 Hb_139518_020 Hb_003463_040--Hb_139518_020 Hb_162933_010--Hb_028105_020 Hb_162933_010--Hb_003694_070 Hb_162933_010--Hb_007111_020 Hb_017279_030 Hb_017279_030 Hb_162933_010--Hb_017279_030 Hb_162933_010--Hb_024128_010 Hb_028105_020--Hb_003694_070 Hb_028105_020--Hb_017279_030 Hb_028105_020--Hb_007111_020 Hb_013874_010 Hb_013874_010 Hb_028105_020--Hb_013874_010 Hb_003694_070--Hb_007111_020 Hb_003694_070--Hb_024128_010 Hb_003694_070--Hb_139518_020 Hb_007111_020--Hb_024128_010 Hb_007111_020--Hb_139518_020 Hb_002417_040 Hb_002417_040 Hb_007111_020--Hb_002417_040 Hb_047623_010 Hb_047623_010 Hb_007111_020--Hb_047623_010 Hb_024128_010--Hb_139518_020 Hb_024128_010--Hb_002417_040 Hb_024128_010--Hb_047623_010 Hb_171554_060 Hb_171554_060 Hb_024128_010--Hb_171554_060 Hb_139518_020--Hb_002417_040 Hb_139518_020--Hb_047623_010 Hb_139518_020--Hb_171554_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.0221641
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0756794

CAGE analysis