Hb_003464_030

Information

Type -
Description -
Location Contig3464: 27996-29694
Sequence    

Annotation

kegg
ID pop:POPTR_0012s13380g
description hypothetical protein
nr
ID XP_012082538.1
description PREDICTED: 60S ribosomal protein L24-like [Jatropha curcas]
swissprot
ID Q9FUL4
description 60S ribosomal protein L24 OS=Prunus avium GN=RPL24 PE=2 SV=1
trembl
ID A0A067KAG6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16624 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36129: 28069-29093
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003464_030 0.0 - - PREDICTED: 60S ribosomal protein L24-like [Jatropha curcas]
2 Hb_000457_210 0.1310911503 - - PREDICTED: kelch repeat-containing protein At3g27220-like [Jatropha curcas]
3 Hb_005306_180 0.1612968065 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [Jatropha curcas]
4 Hb_006698_080 0.1625629302 - - PREDICTED: tobamovirus multiplication protein 1 isoform X2 [Jatropha curcas]
5 Hb_084646_010 0.1675688314 - - hypothetical protein CICLE_v10031746mg [Citrus clementina]
6 Hb_003571_030 0.1698959829 - - hypothetical protein JCGZ_25894 [Jatropha curcas]
7 Hb_002014_020 0.1715239727 - - PREDICTED: protein Mpv17 isoform X2 [Jatropha curcas]
8 Hb_000005_280 0.1723780767 - - PREDICTED: vacuolar protein sorting-associated protein 24 homolog 1-like [Citrus sinensis]
9 Hb_002205_090 0.1727132659 - - RecName: Full=Superoxide dismutase [Mn], mitochondrial; Flags: Precursor [Hevea brasiliensis]
10 Hb_034380_020 0.174010924 - - PREDICTED: phosphoglycerate mutase-like [Jatropha curcas]
11 Hb_000230_240 0.1755867819 - - tRNA/rRNA methyltransferase family protein [Populus trichocarpa]
12 Hb_000538_070 0.1779343406 - - PREDICTED: coatomer subunit delta [Jatropha curcas]
13 Hb_002998_060 0.1790871257 - - PREDICTED: vacuolar protein-sorting-associated protein 33 homolog [Jatropha curcas]
14 Hb_000096_010 0.1799845447 - - PREDICTED: U-box domain-containing protein 30-like [Citrus sinensis]
15 Hb_001414_030 0.1805250148 - - PREDICTED: aspartate-semialdehyde dehydrogenase [Jatropha curcas]
16 Hb_019654_030 0.1810404199 - - maoC-like dehydratase domain-containing family protein [Populus trichocarpa]
17 Hb_001016_120 0.1829689602 - - PREDICTED: 3-dehydroquinate synthase, chloroplastic [Jatropha curcas]
18 Hb_002042_020 0.1831511588 - - hypothetical protein CICLE_v10001869mg [Citrus clementina]
19 Hb_000336_240 0.1844631188 transcription factor TF Family: mTERF LOC100285792 [Zea mays]
20 Hb_000228_110 0.1852069884 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_003464_030 Hb_003464_030 Hb_000457_210 Hb_000457_210 Hb_003464_030--Hb_000457_210 Hb_005306_180 Hb_005306_180 Hb_003464_030--Hb_005306_180 Hb_006698_080 Hb_006698_080 Hb_003464_030--Hb_006698_080 Hb_084646_010 Hb_084646_010 Hb_003464_030--Hb_084646_010 Hb_003571_030 Hb_003571_030 Hb_003464_030--Hb_003571_030 Hb_002014_020 Hb_002014_020 Hb_003464_030--Hb_002014_020 Hb_000457_210--Hb_005306_180 Hb_006698_040 Hb_006698_040 Hb_000457_210--Hb_006698_040 Hb_000457_210--Hb_084646_010 Hb_002217_350 Hb_002217_350 Hb_000457_210--Hb_002217_350 Hb_001638_230 Hb_001638_230 Hb_000457_210--Hb_001638_230 Hb_000483_260 Hb_000483_260 Hb_005306_180--Hb_000483_260 Hb_000665_050 Hb_000665_050 Hb_005306_180--Hb_000665_050 Hb_000787_020 Hb_000787_020 Hb_005306_180--Hb_000787_020 Hb_001016_120 Hb_001016_120 Hb_005306_180--Hb_001016_120 Hb_015778_010 Hb_015778_010 Hb_005306_180--Hb_015778_010 Hb_005306_180--Hb_002014_020 Hb_034380_020 Hb_034380_020 Hb_006698_080--Hb_034380_020 Hb_001085_240 Hb_001085_240 Hb_006698_080--Hb_001085_240 Hb_019654_030 Hb_019654_030 Hb_006698_080--Hb_019654_030 Hb_001828_150 Hb_001828_150 Hb_006698_080--Hb_001828_150 Hb_008245_010 Hb_008245_010 Hb_006698_080--Hb_008245_010 Hb_002631_010 Hb_002631_010 Hb_006698_080--Hb_002631_010 Hb_000116_270 Hb_000116_270 Hb_084646_010--Hb_000116_270 Hb_084646_010--Hb_001016_120 Hb_155159_020 Hb_155159_020 Hb_084646_010--Hb_155159_020 Hb_084646_010--Hb_000787_020 Hb_027380_130 Hb_027380_130 Hb_084646_010--Hb_027380_130 Hb_001159_130 Hb_001159_130 Hb_084646_010--Hb_001159_130 Hb_003571_030--Hb_027380_130 Hb_003571_030--Hb_084646_010 Hb_000483_220 Hb_000483_220 Hb_003571_030--Hb_000483_220 Hb_000207_330 Hb_000207_330 Hb_003571_030--Hb_000207_330 Hb_000646_050 Hb_000646_050 Hb_003571_030--Hb_000646_050 Hb_005396_150 Hb_005396_150 Hb_003571_030--Hb_005396_150 Hb_000236_040 Hb_000236_040 Hb_002014_020--Hb_000236_040 Hb_031862_100 Hb_031862_100 Hb_002014_020--Hb_031862_100 Hb_004889_010 Hb_004889_010 Hb_002014_020--Hb_004889_010 Hb_002014_020--Hb_034380_020 Hb_001218_030 Hb_001218_030 Hb_002014_020--Hb_001218_030 Hb_002014_020--Hb_001828_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.22319 0.106291 0.649276 1.01991 0.184171 0.577805
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.635859 0.999602 1.51366 1.57485 0.558767

CAGE analysis