Hb_003464_040

Information

Type transcription factor
Description TF Family: HB
Location Contig3464: 32154-33075
Sequence    

Annotation

kegg
ID rcu:RCOM_0840490
description homeobox protein, putative
nr
ID XP_002528635.1
description homeobox protein, putative [Ricinus communis]
swissprot
ID Q9LZR0
description Putative homeobox-leucine zipper protein ATHB-51 OS=Arabidopsis thaliana GN=ATHB-51 PE=2 SV=2
trembl
ID B9SRL6
description Homeobox protein, putative OS=Ricinus communis GN=RCOM_0840490 PE=4 SV=1
Gene Ontology
ID GO:0005634
description homeobox-leucine zipper protein athb-51

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36130: 31957-33094
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003464_040 0.0 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
2 Hb_012368_040 0.0102380537 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000193_170 0.053982743 transcription factor TF Family: MYB Myb domain 16-like protein [Theobroma cacao]
4 Hb_000375_200 0.0577808236 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
5 Hb_003226_040 0.0629684641 - - PREDICTED: endoglucanase 17 [Populus euphratica]
6 Hb_001652_090 0.0643524091 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000563_110 0.0678025247 - - PREDICTED: uncharacterized protein LOC100306381 isoform X1 [Glycine max]
8 Hb_006332_030 0.0725562236 - - RecName: Full=Valine N-monooxygenase 1; AltName: Full=Cytochrome P450 79D1 [Manihot esculenta]
9 Hb_002045_020 0.076524306 transcription factor TF Family: AUX/IAA auxin-induced protein aux28 [Populus trichocarpa]
10 Hb_018663_010 0.0769785254 transcription factor TF Family: C2C2-YABBY PREDICTED: axial regulator YABBY 5 [Jatropha curcas]
11 Hb_028995_020 0.07719311 - - PREDICTED: uncharacterized protein LOC105642143 [Jatropha curcas]
12 Hb_000175_110 0.0772735274 - - hypothetical protein JCGZ_06125 [Jatropha curcas]
13 Hb_052530_010 0.0825704701 - - PREDICTED: uncharacterized protein At3g49140 isoform X2 [Jatropha curcas]
14 Hb_000023_030 0.0840012063 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG5 [Jatropha curcas]
15 Hb_011218_020 0.0874988656 - - conserved hypothetical protein [Ricinus communis]
16 Hb_008165_010 0.0899999776 - - PREDICTED: 36.4 kDa proline-rich protein [Solanum lycopersicum]
17 Hb_011859_010 0.09003277 - - hypothetical protein VITISV_027923 [Vitis vinifera]
18 Hb_002453_040 0.0907953528 - - PREDICTED: uncharacterized protein LOC105636487 [Jatropha curcas]
19 Hb_002205_220 0.0927829017 transcription factor TF Family: Orphans two-component system sensor histidine kinase/response regulator, putative [Ricinus communis]
20 Hb_000005_390 0.093025835 - - hypothetical protein JCGZ_04862 [Jatropha curcas]

Gene co-expression network

sample Hb_003464_040 Hb_003464_040 Hb_012368_040 Hb_012368_040 Hb_003464_040--Hb_012368_040 Hb_000193_170 Hb_000193_170 Hb_003464_040--Hb_000193_170 Hb_000375_200 Hb_000375_200 Hb_003464_040--Hb_000375_200 Hb_003226_040 Hb_003226_040 Hb_003464_040--Hb_003226_040 Hb_001652_090 Hb_001652_090 Hb_003464_040--Hb_001652_090 Hb_000563_110 Hb_000563_110 Hb_003464_040--Hb_000563_110 Hb_012368_040--Hb_001652_090 Hb_012368_040--Hb_000563_110 Hb_012368_040--Hb_003226_040 Hb_012368_040--Hb_000193_170 Hb_012368_040--Hb_000375_200 Hb_000193_170--Hb_000375_200 Hb_000130_400 Hb_000130_400 Hb_000193_170--Hb_000130_400 Hb_000187_020 Hb_000187_020 Hb_000193_170--Hb_000187_020 Hb_018663_010 Hb_018663_010 Hb_000193_170--Hb_018663_010 Hb_000375_200--Hb_018663_010 Hb_000375_200--Hb_000130_400 Hb_000375_200--Hb_000187_020 Hb_002045_020 Hb_002045_020 Hb_003226_040--Hb_002045_020 Hb_000023_030 Hb_000023_030 Hb_003226_040--Hb_000023_030 Hb_052530_010 Hb_052530_010 Hb_003226_040--Hb_052530_010 Hb_004117_060 Hb_004117_060 Hb_003226_040--Hb_004117_060 Hb_000005_390 Hb_000005_390 Hb_001652_090--Hb_000005_390 Hb_001652_090--Hb_000563_110 Hb_008642_020 Hb_008642_020 Hb_001652_090--Hb_008642_020 Hb_011218_020 Hb_011218_020 Hb_001652_090--Hb_011218_020 Hb_001652_090--Hb_002045_020 Hb_000563_110--Hb_008642_020 Hb_000175_110 Hb_000175_110 Hb_000563_110--Hb_000175_110 Hb_000563_110--Hb_000005_390 Hb_000563_110--Hb_002045_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 13.314 2.56534 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.932861

CAGE analysis