Hb_003464_050

Information

Type -
Description -
Location Contig3464: 41125-42643
Sequence    

Annotation

kegg
ID pop:POPTR_0006s11880g
description hypothetical protein
nr
ID XP_006381333.1
description hypothetical protein POPTR_0006s11880g [Populus trichocarpa]
swissprot
ID Q9LEX0
description F-box protein PP2-A13 OS=Arabidopsis thaliana GN=PP2A13 PE=1 SV=1
trembl
ID B9MTM6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s11880g PE=4 SV=1
Gene Ontology
ID GO:0030246
description f-box protein pp2-a15

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36131: 41302-46252
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003464_050 0.0 - - hypothetical protein POPTR_0006s11880g [Populus trichocarpa]
2 Hb_005532_050 0.0474767042 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
3 Hb_001926_030 0.0664138037 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
4 Hb_001595_030 0.0665949449 - - PREDICTED: nuclear inhibitor of protein phosphatase 1 isoform X1 [Jatropha curcas]
5 Hb_143629_210 0.0676060936 - - PREDICTED: transcription factor PIF3 isoform X1 [Jatropha curcas]
6 Hb_008803_090 0.0695587959 - - PREDICTED: COP9 signalosome complex subunit 6a [Jatropha curcas]
7 Hb_000152_380 0.0740919821 - - PREDICTED: hypersensitive-induced response protein 4 [Jatropha curcas]
8 Hb_001677_210 0.0745151286 - - hypothetical protein JCGZ_01374 [Jatropha curcas]
9 Hb_000562_090 0.0745912926 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 6 [Jatropha curcas]
10 Hb_000125_170 0.07503262 transcription factor TF Family: mTERF hypothetical protein VITISV_028994 [Vitis vinifera]
11 Hb_006185_050 0.0754503808 - - hypothetical protein POPTR_0001s20590g [Populus trichocarpa]
12 Hb_002400_470 0.077562518 - - PREDICTED: calcium uptake protein 1, mitochondrial isoform X1 [Jatropha curcas]
13 Hb_000879_200 0.0779508333 - - PREDICTED: A-kinase anchor protein 17A [Jatropha curcas]
14 Hb_106552_050 0.0800070685 - - PREDICTED: uncharacterized protein LOC105642134 [Jatropha curcas]
15 Hb_001301_200 0.081182186 desease resistance Gene Name: NB-ARC Disease resistance protein RPS2, putative [Ricinus communis]
16 Hb_001252_010 0.0812428741 - - hypothetical protein JCGZ_01389 [Jatropha curcas]
17 Hb_000710_020 0.0814530772 - - PREDICTED: E3 ubiquitin-protein ligase MARCH2 isoform X2 [Populus euphratica]
18 Hb_001680_010 0.0824145795 - - Serine/threonine protein kinase SAPK3 [Medicago truncatula]
19 Hb_003609_030 0.0831769863 - - PREDICTED: autophagy-related protein 18f [Jatropha curcas]
20 Hb_010222_050 0.0833045489 - - PREDICTED: WD repeat-containing protein 48 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_003464_050 Hb_003464_050 Hb_005532_050 Hb_005532_050 Hb_003464_050--Hb_005532_050 Hb_001926_030 Hb_001926_030 Hb_003464_050--Hb_001926_030 Hb_001595_030 Hb_001595_030 Hb_003464_050--Hb_001595_030 Hb_143629_210 Hb_143629_210 Hb_003464_050--Hb_143629_210 Hb_008803_090 Hb_008803_090 Hb_003464_050--Hb_008803_090 Hb_000152_380 Hb_000152_380 Hb_003464_050--Hb_000152_380 Hb_001680_010 Hb_001680_010 Hb_005532_050--Hb_001680_010 Hb_001301_200 Hb_001301_200 Hb_005532_050--Hb_001301_200 Hb_001797_050 Hb_001797_050 Hb_005532_050--Hb_001797_050 Hb_005532_050--Hb_008803_090 Hb_001541_020 Hb_001541_020 Hb_005532_050--Hb_001541_020 Hb_004055_150 Hb_004055_150 Hb_001926_030--Hb_004055_150 Hb_000879_200 Hb_000879_200 Hb_001926_030--Hb_000879_200 Hb_002686_250 Hb_002686_250 Hb_001926_030--Hb_002686_250 Hb_006620_020 Hb_006620_020 Hb_001926_030--Hb_006620_020 Hb_000853_230 Hb_000853_230 Hb_001926_030--Hb_000853_230 Hb_000010_400 Hb_000010_400 Hb_001926_030--Hb_000010_400 Hb_001595_030--Hb_000879_200 Hb_036790_100 Hb_036790_100 Hb_001595_030--Hb_036790_100 Hb_000038_170 Hb_000038_170 Hb_001595_030--Hb_000038_170 Hb_000327_120 Hb_000327_120 Hb_001595_030--Hb_000327_120 Hb_002603_120 Hb_002603_120 Hb_001595_030--Hb_002603_120 Hb_006185_050 Hb_006185_050 Hb_001595_030--Hb_006185_050 Hb_000808_270 Hb_000808_270 Hb_143629_210--Hb_000808_270 Hb_004032_150 Hb_004032_150 Hb_143629_210--Hb_004032_150 Hb_000618_040 Hb_000618_040 Hb_143629_210--Hb_000618_040 Hb_000010_330 Hb_000010_330 Hb_143629_210--Hb_000010_330 Hb_000451_010 Hb_000451_010 Hb_143629_210--Hb_000451_010 Hb_106552_050 Hb_106552_050 Hb_008803_090--Hb_106552_050 Hb_008803_090--Hb_001926_030 Hb_001635_170 Hb_001635_170 Hb_008803_090--Hb_001635_170 Hb_008803_090--Hb_001595_030 Hb_001677_210 Hb_001677_210 Hb_008803_090--Hb_001677_210 Hb_002518_280 Hb_002518_280 Hb_000152_380--Hb_002518_280 Hb_004310_150 Hb_004310_150 Hb_000152_380--Hb_004310_150 Hb_000780_230 Hb_000780_230 Hb_000152_380--Hb_000780_230 Hb_010618_010 Hb_010618_010 Hb_000152_380--Hb_010618_010 Hb_001248_060 Hb_001248_060 Hb_000152_380--Hb_001248_060 Hb_004221_020 Hb_004221_020 Hb_000152_380--Hb_004221_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
46.4668 42.2151 29.8225 26.5867 51.1124 59.5617
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.495 37.4978 44.3595 20.185 16.1381

CAGE analysis