Hb_003464_060

Information

Type -
Description -
Location Contig3464: 45528-46394
Sequence    

Annotation

kegg
ID tcc:TCM_022394
description Phloem protein 2-A15
nr
ID XP_012082540.1
description PREDICTED: F-box protein PP2-A15 [Jatropha curcas]
swissprot
ID Q9LF92
description F-box protein PP2-A15 OS=Arabidopsis thaliana GN=PP2A15 PE=2 SV=1
trembl
ID A0A067JZG0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16626 PE=4 SV=1
Gene Ontology
ID GO:0005634
description f-box protein pp2-a15

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36131: 41302-46252
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003464_060 0.0 - - PREDICTED: F-box protein PP2-A15 [Jatropha curcas]
2 Hb_000768_040 0.0541747516 - - PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 2-like [Jatropha curcas]
3 Hb_000030_300 0.0659361239 - - Thioredoxin, putative [Ricinus communis]
4 Hb_002016_110 0.0673672423 - - transducin family protein [Populus trichocarpa]
5 Hb_004684_010 0.06814206 - - PREDICTED: triacylglycerol lipase SDP1 [Jatropha curcas]
6 Hb_004907_110 0.0703472548 - - PREDICTED: BTB/POZ and MATH domain-containing protein 3 isoform X1 [Jatropha curcas]
7 Hb_002026_180 0.0715621864 - - PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]
8 Hb_000577_010 0.0719259322 - - hypothetical protein JCGZ_23887 [Jatropha curcas]
9 Hb_011673_030 0.0720911367 - - hypothetical protein JCGZ_22219 [Jatropha curcas]
10 Hb_002603_120 0.0736490112 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
11 Hb_003058_190 0.0742726222 - - PREDICTED: uncharacterized protein LOC105628951 isoform X1 [Jatropha curcas]
12 Hb_120327_010 0.074636127 - - PREDICTED: uncharacterized protein LOC105650959 [Jatropha curcas]
13 Hb_189003_080 0.0751677693 - - PREDICTED: rab3 GTPase-activating protein non-catalytic subunit isoform X1 [Jatropha curcas]
14 Hb_001507_020 0.0752548566 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14170 [Jatropha curcas]
15 Hb_002496_030 0.0755962738 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial [Jatropha curcas]
16 Hb_002137_020 0.075701066 - - ubiquitin-protein ligase, putative [Ricinus communis]
17 Hb_003106_060 0.0787225982 - - hypothetical protein POPTR_0015s08140g [Populus trichocarpa]
18 Hb_001226_030 0.0788431642 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 4 [Jatropha curcas]
19 Hb_004837_040 0.0811802377 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
20 Hb_004724_060 0.0816047564 - - PREDICTED: uncharacterized protein LOC105640155 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003464_060 Hb_003464_060 Hb_000768_040 Hb_000768_040 Hb_003464_060--Hb_000768_040 Hb_000030_300 Hb_000030_300 Hb_003464_060--Hb_000030_300 Hb_002016_110 Hb_002016_110 Hb_003464_060--Hb_002016_110 Hb_004684_010 Hb_004684_010 Hb_003464_060--Hb_004684_010 Hb_004907_110 Hb_004907_110 Hb_003464_060--Hb_004907_110 Hb_002026_180 Hb_002026_180 Hb_003464_060--Hb_002026_180 Hb_002603_120 Hb_002603_120 Hb_000768_040--Hb_002603_120 Hb_001021_170 Hb_001021_170 Hb_000768_040--Hb_001021_170 Hb_001226_030 Hb_001226_030 Hb_000768_040--Hb_001226_030 Hb_000768_040--Hb_004684_010 Hb_004355_020 Hb_004355_020 Hb_000768_040--Hb_004355_020 Hb_000030_300--Hb_002026_180 Hb_002496_030 Hb_002496_030 Hb_000030_300--Hb_002496_030 Hb_003175_010 Hb_003175_010 Hb_000030_300--Hb_003175_010 Hb_001242_060 Hb_001242_060 Hb_000030_300--Hb_001242_060 Hb_000808_270 Hb_000808_270 Hb_000030_300--Hb_000808_270 Hb_000926_280 Hb_000926_280 Hb_000030_300--Hb_000926_280 Hb_006915_050 Hb_006915_050 Hb_002016_110--Hb_006915_050 Hb_002016_110--Hb_002026_180 Hb_007441_120 Hb_007441_120 Hb_002016_110--Hb_007441_120 Hb_005663_060 Hb_005663_060 Hb_002016_110--Hb_005663_060 Hb_189003_080 Hb_189003_080 Hb_002016_110--Hb_189003_080 Hb_002016_110--Hb_000030_300 Hb_007416_180 Hb_007416_180 Hb_004684_010--Hb_007416_180 Hb_002311_040 Hb_002311_040 Hb_004684_010--Hb_002311_040 Hb_015807_070 Hb_015807_070 Hb_004684_010--Hb_015807_070 Hb_004724_060 Hb_004724_060 Hb_004684_010--Hb_004724_060 Hb_000805_020 Hb_000805_020 Hb_004907_110--Hb_000805_020 Hb_007532_030 Hb_007532_030 Hb_004907_110--Hb_007532_030 Hb_008725_260 Hb_008725_260 Hb_004907_110--Hb_008725_260 Hb_031527_040 Hb_031527_040 Hb_004907_110--Hb_031527_040 Hb_000876_070 Hb_000876_070 Hb_004907_110--Hb_000876_070 Hb_002631_060 Hb_002631_060 Hb_004907_110--Hb_002631_060 Hb_007416_280 Hb_007416_280 Hb_002026_180--Hb_007416_280 Hb_000571_120 Hb_000571_120 Hb_002026_180--Hb_000571_120 Hb_003766_040 Hb_003766_040 Hb_002026_180--Hb_003766_040 Hb_002026_180--Hb_189003_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.7793 29.649 13.4553 11.3876 32.8546 41.8056
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.1423 34.2261 43.7094 22.2535 18.8389

CAGE analysis