Hb_003464_100

Information

Type -
Description -
Location Contig3464: 80361-82561
Sequence    

Annotation

kegg
ID rcu:RCOM_0840960
description Protein kinase APK1A, chloroplast precursor, putative (EC:2.7.11.30)
nr
ID XP_012082544.1
description PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
swissprot
ID Q9SJQ1
description Leucine-rich repeat receptor-like protein kinase PXC1 OS=Arabidopsis thaliana GN=PXC1 PE=2 SV=1
trembl
ID A0A067JZ71
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16630 PE=4 SV=1
Gene Ontology
ID GO:0005634
description probable leucine-rich repeat receptor-like protein kinase at1g68400

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003464_100 0.0 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
2 Hb_000175_600 0.0915052324 - - PREDICTED: TATA-binding protein-associated factor 2N isoform X2 [Jatropha curcas]
3 Hb_004102_180 0.101552374 - - zinc finger family protein [Populus trichocarpa]
4 Hb_069384_010 0.1087372651 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA27-like isoform X1 [Jatropha curcas]
5 Hb_002326_090 0.1094397301 - - amino acid transporter, putative [Ricinus communis]
6 Hb_000236_210 0.1096039296 - - hypothetical protein JCGZ_01083 [Jatropha curcas]
7 Hb_011218_010 0.1138372689 - - PREDICTED: putative indole-3-acetic acid-amido synthetase GH3.9 [Jatropha curcas]
8 Hb_007292_060 0.1140272618 - - PREDICTED: uncharacterized protein LOC105632853 [Jatropha curcas]
9 Hb_001006_300 0.118339273 - - lipid binding protein, putative [Ricinus communis]
10 Hb_001357_220 0.1213064069 - - dopamine beta-monooxygenase, putative [Ricinus communis]
11 Hb_000964_120 0.1225130506 - - DNA-damage-inducible protein f, putative [Ricinus communis]
12 Hb_140627_040 0.1249123955 - - PREDICTED: vesicle-associated protein 4-1-like [Jatropha curcas]
13 Hb_000152_630 0.125435424 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 [Jatropha curcas]
14 Hb_001898_030 0.1259571397 - - protein kinase-coding resistance protein [Nicotiana repanda]
15 Hb_001246_080 0.1269489521 - - PREDICTED: putative invertase inhibitor [Jatropha curcas]
16 Hb_002030_190 0.127068216 - - conserved hypothetical protein [Ricinus communis]
17 Hb_136944_010 0.1292264138 - - hypothetical protein JCGZ_02762 [Jatropha curcas]
18 Hb_002925_040 0.1302610187 desease resistance Gene Name: TIR hypothetical protein JCGZ_01545 [Jatropha curcas]
19 Hb_017061_010 0.1318176417 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 5-like [Jatropha curcas]
20 Hb_019299_020 0.1328132505 - - PREDICTED: putative kinase-like protein TMKL1 [Jatropha curcas]

Gene co-expression network

sample Hb_003464_100 Hb_003464_100 Hb_000175_600 Hb_000175_600 Hb_003464_100--Hb_000175_600 Hb_004102_180 Hb_004102_180 Hb_003464_100--Hb_004102_180 Hb_069384_010 Hb_069384_010 Hb_003464_100--Hb_069384_010 Hb_002326_090 Hb_002326_090 Hb_003464_100--Hb_002326_090 Hb_000236_210 Hb_000236_210 Hb_003464_100--Hb_000236_210 Hb_011218_010 Hb_011218_010 Hb_003464_100--Hb_011218_010 Hb_000175_600--Hb_004102_180 Hb_000175_600--Hb_002326_090 Hb_007292_060 Hb_007292_060 Hb_000175_600--Hb_007292_060 Hb_136944_010 Hb_136944_010 Hb_000175_600--Hb_136944_010 Hb_000175_600--Hb_011218_010 Hb_000964_120 Hb_000964_120 Hb_000175_600--Hb_000964_120 Hb_004102_180--Hb_069384_010 Hb_004102_180--Hb_011218_010 Hb_004102_180--Hb_007292_060 Hb_007290_010 Hb_007290_010 Hb_004102_180--Hb_007290_010 Hb_004102_180--Hb_002326_090 Hb_069384_010--Hb_011218_010 Hb_000186_090 Hb_000186_090 Hb_069384_010--Hb_000186_090 Hb_069384_010--Hb_007290_010 Hb_007292_020 Hb_007292_020 Hb_069384_010--Hb_007292_020 Hb_000152_630 Hb_000152_630 Hb_069384_010--Hb_000152_630 Hb_002326_090--Hb_007292_060 Hb_002326_090--Hb_000964_120 Hb_090210_010 Hb_090210_010 Hb_002326_090--Hb_090210_010 Hb_001898_030 Hb_001898_030 Hb_002326_090--Hb_001898_030 Hb_000635_020 Hb_000635_020 Hb_000236_210--Hb_000635_020 Hb_020831_060 Hb_020831_060 Hb_000236_210--Hb_020831_060 Hb_003893_060 Hb_003893_060 Hb_000236_210--Hb_003893_060 Hb_019299_020 Hb_019299_020 Hb_000236_210--Hb_019299_020 Hb_000220_020 Hb_000220_020 Hb_000236_210--Hb_000220_020 Hb_011218_010--Hb_007292_060 Hb_011218_010--Hb_000964_120 Hb_011218_010--Hb_002326_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.153342 0.654685 2.50539 17.3292 0.298518 0.0705675
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.021193 0 0.0316692 0.437635 0.670677

CAGE analysis