Hb_003467_010

Information

Type -
Description -
Location Contig3467: 4326-9944
Sequence    

Annotation

kegg
ID pop:POPTR_0017s03980g
description POPTRDRAFT_258099; hypothetical protein
nr
ID XP_012081925.1
description PREDICTED: probable thiol methyltransferase 2 [Jatropha curcas]
swissprot
ID Q6AWU6
description Probable thiol methyltransferase 2 OS=Arabidopsis thaliana GN=HOL3 PE=1 SV=1
trembl
ID A0A067K092
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19270 PE=4 SV=1
Gene Ontology
ID GO:0008757
description probable thiol methyltransferase 2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36147: 4350-15777 , PASA_asmbl_36148: 6420-6650
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003467_010 0.0 - - PREDICTED: probable thiol methyltransferase 2 [Jatropha curcas]
2 Hb_004450_060 0.0479485303 - - PREDICTED: uncharacterized protein LOC105638784 isoform X2 [Jatropha curcas]
3 Hb_000368_020 0.063183098 - - uroporphyrin-III methyltransferase, putative [Ricinus communis]
4 Hb_011942_080 0.0632356789 - - PREDICTED: ubiquitin receptor RAD23b-like [Gossypium raimondii]
5 Hb_003849_060 0.0668436193 - - PREDICTED: pentatricopeptide repeat-containing protein At1g13040, mitochondrial [Jatropha curcas]
6 Hb_007632_110 0.0684022485 - - chromatin regulatory protein sir2, putative [Ricinus communis]
7 Hb_000394_190 0.0701125221 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
8 Hb_178968_100 0.0733458774 - - PREDICTED: putative glucose-6-phosphate 1-epimerase isoform X1 [Populus euphratica]
9 Hb_009222_010 0.0737869248 - - WD-repeat protein, putative [Ricinus communis]
10 Hb_001357_380 0.0756736235 - - PREDICTED: probable tetraacyldisaccharide 4'-kinase, mitochondrial isoform X1 [Jatropha curcas]
11 Hb_001142_050 0.0778456188 - - PREDICTED: coiled-coil domain-containing protein 12 [Jatropha curcas]
12 Hb_001105_010 0.0792106497 desease resistance Gene Name: AIG1 PREDICTED: translocase of chloroplast 33, chloroplastic-like [Jatropha curcas]
13 Hb_007026_030 0.0799186708 - - rubisco subunit binding-protein alpha subunit, ruba, putative [Ricinus communis]
14 Hb_001405_120 0.0818949657 - - PREDICTED: eukaryotic translation initiation factor 3 subunit H [Jatropha curcas]
15 Hb_012799_110 0.0819258298 - - pre-mRNA cleavage factor im, 25kD subunit, putative [Ricinus communis]
16 Hb_031939_010 0.0835282334 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
17 Hb_011848_010 0.0838260221 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
18 Hb_000794_050 0.0848175555 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 12 [Jatropha curcas]
19 Hb_001014_050 0.0864267917 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105647306 [Jatropha curcas]
20 Hb_007007_050 0.087667053 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Malus domestica]

Gene co-expression network

sample Hb_003467_010 Hb_003467_010 Hb_004450_060 Hb_004450_060 Hb_003467_010--Hb_004450_060 Hb_000368_020 Hb_000368_020 Hb_003467_010--Hb_000368_020 Hb_011942_080 Hb_011942_080 Hb_003467_010--Hb_011942_080 Hb_003849_060 Hb_003849_060 Hb_003467_010--Hb_003849_060 Hb_007632_110 Hb_007632_110 Hb_003467_010--Hb_007632_110 Hb_000394_190 Hb_000394_190 Hb_003467_010--Hb_000394_190 Hb_011848_010 Hb_011848_010 Hb_004450_060--Hb_011848_010 Hb_178968_100 Hb_178968_100 Hb_004450_060--Hb_178968_100 Hb_003091_010 Hb_003091_010 Hb_004450_060--Hb_003091_010 Hb_004450_060--Hb_003849_060 Hb_000359_330 Hb_000359_330 Hb_004450_060--Hb_000359_330 Hb_000794_050 Hb_000794_050 Hb_000368_020--Hb_000794_050 Hb_006960_050 Hb_006960_050 Hb_000368_020--Hb_006960_050 Hb_106552_050 Hb_106552_050 Hb_000368_020--Hb_106552_050 Hb_000926_310 Hb_000926_310 Hb_000368_020--Hb_000926_310 Hb_006824_060 Hb_006824_060 Hb_000368_020--Hb_006824_060 Hb_031939_010 Hb_031939_010 Hb_011942_080--Hb_031939_010 Hb_007336_020 Hb_007336_020 Hb_011942_080--Hb_007336_020 Hb_000976_320 Hb_000976_320 Hb_011942_080--Hb_000976_320 Hb_001357_380 Hb_001357_380 Hb_011942_080--Hb_001357_380 Hb_012799_110 Hb_012799_110 Hb_011942_080--Hb_012799_110 Hb_000808_250 Hb_000808_250 Hb_003849_060--Hb_000808_250 Hb_000334_270 Hb_000334_270 Hb_003849_060--Hb_000334_270 Hb_003849_060--Hb_011848_010 Hb_003849_060--Hb_000394_190 Hb_002192_080 Hb_002192_080 Hb_003849_060--Hb_002192_080 Hb_001105_010 Hb_001105_010 Hb_007632_110--Hb_001105_010 Hb_007632_110--Hb_011942_080 Hb_006355_010 Hb_006355_010 Hb_007632_110--Hb_006355_010 Hb_007632_110--Hb_004450_060 Hb_000207_130 Hb_000207_130 Hb_007632_110--Hb_000207_130 Hb_000261_250 Hb_000261_250 Hb_000394_190--Hb_000261_250 Hb_000244_300 Hb_000244_300 Hb_000394_190--Hb_000244_300 Hb_000787_170 Hb_000787_170 Hb_000394_190--Hb_000787_170 Hb_000394_190--Hb_012799_110 Hb_033095_020 Hb_033095_020 Hb_000394_190--Hb_033095_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.6332 16.5279 18.535 8.08708 26.8212 31.5586
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.0291 19.8997 7.90017 10.2249 8.36689

CAGE analysis