Hb_003470_040

Information

Type -
Description -
Location Contig3470: 33081-40519
Sequence    

Annotation

kegg
ID rcu:RCOM_0342870
description 2-oxoisovalerate dehydrogenase, putative (EC:1.2.4.1)
nr
ID XP_012080827.1
description PREDICTED: 2-oxoisovalerate dehydrogenase subunit beta 1, mitochondrial [Jatropha curcas]
swissprot
ID Q9SAV3
description 2-oxoisovalerate dehydrogenase subunit beta 1, mitochondrial OS=Arabidopsis thaliana GN=BCDH BETA1 PE=2 SV=1
trembl
ID A0A067K6H2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16193 PE=4 SV=1
Gene Ontology
ID GO:0004739
description 2-oxoisovalerate dehydrogenase subunit beta mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36263: 33148-40523 , PASA_asmbl_36264: 33148-36956
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003470_040 0.0 - - PREDICTED: 2-oxoisovalerate dehydrogenase subunit beta 1, mitochondrial [Jatropha curcas]
2 Hb_029695_080 0.0527597452 - - PREDICTED: NAD-dependent protein deacetylase SRT1 [Prunus mume]
3 Hb_000207_200 0.0560166017 - - PREDICTED: histidinol-phosphate aminotransferase, chloroplastic-like [Jatropha curcas]
4 Hb_033642_120 0.0572195885 - - PREDICTED: nucleolar GTP-binding protein 2 [Vitis vinifera]
5 Hb_003687_120 0.0705601221 - - PREDICTED: serine/threonine-protein kinase tricorner-like [Jatropha curcas]
6 Hb_000089_210 0.0729771373 - - unknown [Medicago truncatula]
7 Hb_002110_160 0.0755269378 - - PREDICTED: phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic [Jatropha curcas]
8 Hb_000868_120 0.0758589849 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 2 [Jatropha curcas]
9 Hb_005977_030 0.0773385974 - - PREDICTED: monothiol glutaredoxin-S10-like [Jatropha curcas]
10 Hb_002909_040 0.0783533419 desease resistance Gene Name: AAA PREDICTED: 26S protease regulatory subunit 6B homolog [Jatropha curcas]
11 Hb_000048_080 0.0791547865 - - PREDICTED: cyclin-dependent kinase D-3 isoform X1 [Jatropha curcas]
12 Hb_000260_770 0.0798453651 - - er lumen protein retaining receptor, putative [Ricinus communis]
13 Hb_003506_030 0.0818848883 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X2 [Jatropha curcas]
14 Hb_001500_120 0.0822418932 - - ABC transporter family protein [Hevea brasiliensis]
15 Hb_010287_020 0.0831277406 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
16 Hb_001322_020 0.0880768399 - - PREDICTED: polycomb group protein VERNALIZATION 2-like isoform X2 [Populus euphratica]
17 Hb_009449_060 0.0883843944 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
18 Hb_000723_030 0.0896742642 transcription factor TF Family: E2F-DP PREDICTED: transcription factor-like protein DPB isoform X1 [Jatropha curcas]
19 Hb_000085_170 0.0904431598 - - PREDICTED: transcription initiation factor TFIID subunit 6-like isoform X1 [Jatropha curcas]
20 Hb_009178_010 0.090643947 - - PREDICTED: uncharacterized protein LOC105637474 [Jatropha curcas]

Gene co-expression network

sample Hb_003470_040 Hb_003470_040 Hb_029695_080 Hb_029695_080 Hb_003470_040--Hb_029695_080 Hb_000207_200 Hb_000207_200 Hb_003470_040--Hb_000207_200 Hb_033642_120 Hb_033642_120 Hb_003470_040--Hb_033642_120 Hb_003687_120 Hb_003687_120 Hb_003470_040--Hb_003687_120 Hb_000089_210 Hb_000089_210 Hb_003470_040--Hb_000089_210 Hb_002110_160 Hb_002110_160 Hb_003470_040--Hb_002110_160 Hb_029695_080--Hb_000207_200 Hb_029695_080--Hb_033642_120 Hb_002909_040 Hb_002909_040 Hb_029695_080--Hb_002909_040 Hb_001221_440 Hb_001221_440 Hb_029695_080--Hb_001221_440 Hb_003506_030 Hb_003506_030 Hb_029695_080--Hb_003506_030 Hb_000207_200--Hb_002909_040 Hb_000207_200--Hb_000089_210 Hb_000207_200--Hb_033642_120 Hb_000207_200--Hb_002110_160 Hb_000868_120 Hb_000868_120 Hb_033642_120--Hb_000868_120 Hb_001439_220 Hb_001439_220 Hb_033642_120--Hb_001439_220 Hb_000661_120 Hb_000661_120 Hb_033642_120--Hb_000661_120 Hb_010287_020 Hb_010287_020 Hb_033642_120--Hb_010287_020 Hb_008725_050 Hb_008725_050 Hb_003687_120--Hb_008725_050 Hb_003428_090 Hb_003428_090 Hb_003687_120--Hb_003428_090 Hb_000723_030 Hb_000723_030 Hb_003687_120--Hb_000723_030 Hb_000890_160 Hb_000890_160 Hb_003687_120--Hb_000890_160 Hb_178968_060 Hb_178968_060 Hb_003687_120--Hb_178968_060 Hb_001699_010 Hb_001699_010 Hb_000089_210--Hb_001699_010 Hb_000089_210--Hb_002909_040 Hb_005977_030 Hb_005977_030 Hb_000089_210--Hb_005977_030 Hb_004096_160 Hb_004096_160 Hb_000089_210--Hb_004096_160 Hb_000089_210--Hb_003506_030 Hb_000282_090 Hb_000282_090 Hb_002110_160--Hb_000282_090 Hb_010775_030 Hb_010775_030 Hb_002110_160--Hb_010775_030 Hb_002110_160--Hb_010287_020 Hb_004870_050 Hb_004870_050 Hb_002110_160--Hb_004870_050 Hb_002110_160--Hb_000868_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.2368 25.3722 40.9019 18.2038 13.5109 10.5524
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.1824 12.4354 7.67596 18.2195 17.3719

CAGE analysis