Hb_003470_110

Information

Type -
Description -
Location Contig3470: 107915-114201
Sequence    

Annotation

kegg
ID rcu:RCOM_0342960
description cytochrome P450, putative (EC:1.14.13.76)
nr
ID CBI39273.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q50EK0
description Cytochrome P450 716B2 OS=Picea sitchensis GN=CYP716B2 PE=2 SV=1
trembl
ID D7U959
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0041g01500 PE=4 SV=1
Gene Ontology
ID GO:0005506
description beta-amyrin 28-oxidase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36282: 111922-113243
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003470_110 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_031089_020 0.0943665882 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
3 Hb_000236_180 0.0988235813 - - serine hydroxymethyltransferase, putative [Ricinus communis]
4 Hb_098795_030 0.1089244824 - - PREDICTED: metal tolerance protein 1-like [Vitis vinifera]
5 Hb_006615_230 0.1107460023 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
6 Hb_084147_010 0.1156477561 - - amino acid transporter, putative [Ricinus communis]
7 Hb_030565_100 0.1170915905 - - serine hydroxymethyltransferase, putative [Ricinus communis]
8 Hb_029223_040 0.1240630025 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
9 Hb_000580_110 0.124270605 - - PREDICTED: UDP-glucuronate 4-epimerase 3 [Jatropha curcas]
10 Hb_003001_130 0.1243409369 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001119_070 0.127358241 - - methylenetetrahydrofolate reductase, putative [Ricinus communis]
12 Hb_026527_010 0.1276168445 - - PREDICTED: caffeoylshikimate esterase-like [Populus euphratica]
13 Hb_011360_110 0.1318197663 - - PREDICTED: UDP-glucose 6-dehydrogenase 1 [Vitis vinifera]
14 Hb_004241_110 0.13318753 - - Minor allergen Alt a, putative [Ricinus communis]
15 Hb_004522_030 0.1333050712 - - PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating 3 [Jatropha curcas]
16 Hb_001329_180 0.1341428939 - - S-adenosylmethionine synthetase 1 family protein [Populus trichocarpa]
17 Hb_000455_070 0.1341925416 - - PREDICTED: LOW QUALITY PROTEIN: carboxymethylenebutenolidase homolog [Jatropha curcas]
18 Hb_007590_100 0.1357592358 - - PREDICTED: phosphoinositide phospholipase C 4-like [Jatropha curcas]
19 Hb_000696_070 0.1385637927 - - PREDICTED: aspartic proteinase-like protein 1 [Jatropha curcas]
20 Hb_189003_070 0.1386552662 - - PREDICTED: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like [Jatropha curcas]

Gene co-expression network

sample Hb_003470_110 Hb_003470_110 Hb_031089_020 Hb_031089_020 Hb_003470_110--Hb_031089_020 Hb_000236_180 Hb_000236_180 Hb_003470_110--Hb_000236_180 Hb_098795_030 Hb_098795_030 Hb_003470_110--Hb_098795_030 Hb_006615_230 Hb_006615_230 Hb_003470_110--Hb_006615_230 Hb_084147_010 Hb_084147_010 Hb_003470_110--Hb_084147_010 Hb_030565_100 Hb_030565_100 Hb_003470_110--Hb_030565_100 Hb_031089_020--Hb_084147_010 Hb_001922_030 Hb_001922_030 Hb_031089_020--Hb_001922_030 Hb_004241_110 Hb_004241_110 Hb_031089_020--Hb_004241_110 Hb_002200_070 Hb_002200_070 Hb_031089_020--Hb_002200_070 Hb_031089_020--Hb_030565_100 Hb_000580_110 Hb_000580_110 Hb_000236_180--Hb_000580_110 Hb_000236_180--Hb_030565_100 Hb_000417_380 Hb_000417_380 Hb_000236_180--Hb_000417_380 Hb_000236_180--Hb_006615_230 Hb_000077_100 Hb_000077_100 Hb_000236_180--Hb_000077_100 Hb_098795_030--Hb_006615_230 Hb_002495_030 Hb_002495_030 Hb_098795_030--Hb_002495_030 Hb_002097_080 Hb_002097_080 Hb_098795_030--Hb_002097_080 Hb_001976_020 Hb_001976_020 Hb_098795_030--Hb_001976_020 Hb_002685_220 Hb_002685_220 Hb_098795_030--Hb_002685_220 Hb_134014_010 Hb_134014_010 Hb_006615_230--Hb_134014_010 Hb_189003_070 Hb_189003_070 Hb_006615_230--Hb_189003_070 Hb_001119_070 Hb_001119_070 Hb_006615_230--Hb_001119_070 Hb_158092_040 Hb_158092_040 Hb_006615_230--Hb_158092_040 Hb_006615_230--Hb_002495_030 Hb_084147_010--Hb_004241_110 Hb_001102_160 Hb_001102_160 Hb_084147_010--Hb_001102_160 Hb_012395_110 Hb_012395_110 Hb_084147_010--Hb_012395_110 Hb_084147_010--Hb_030565_100 Hb_030565_100--Hb_000077_100 Hb_029223_040 Hb_029223_040 Hb_030565_100--Hb_029223_040 Hb_174541_030 Hb_174541_030 Hb_030565_100--Hb_174541_030 Hb_000297_140 Hb_000297_140 Hb_030565_100--Hb_000297_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.306497 2.47407 2.70624 12.8216 0.358587 0.279631
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.04412 0.942466 0.646586 3.02498 5.74317

CAGE analysis