Hb_003471_020

Information

Type -
Description -
Location Contig3471: 52839-57943
Sequence    

Annotation

kegg
ID rcu:RCOM_0834710
description ADP-ribosylation factor, putative
nr
ID XP_012093133.1
description PREDICTED: ADP-ribosylation factor-like protein 8A [Jatropha curcas]
swissprot
ID Q5ZKQ8
description ADP-ribosylation factor-like protein 8A OS=Gallus gallus GN=ARL8A PE=2 SV=1
trembl
ID A0A067LJN8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16342 PE=4 SV=1
Gene Ontology
ID GO:0005622
description adp-ribosylation factor-like protein 8a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36283: 52772-57693
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003471_020 0.0 - - PREDICTED: ADP-ribosylation factor-like protein 8A [Jatropha curcas]
2 Hb_004040_040 0.1333343759 desease resistance Gene Name: ABC_tran hypothetical protein POPTR_0006s07370g [Populus trichocarpa]
3 Hb_148131_010 0.1352715086 - - PREDICTED: ribosome biogenesis protein WDR12-like, partial [Jatropha curcas]
4 Hb_027136_010 0.1481201924 - - hypothetical protein L484_010426 [Morus notabilis]
5 Hb_150346_010 0.1506985415 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
6 Hb_000424_150 0.1559277736 - - PREDICTED: copper transporter 5.1-like [Jatropha curcas]
7 Hb_002814_060 0.1583176172 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 [Jatropha curcas]
8 Hb_003939_040 0.1606862217 - - hypothetical protein CICLE_v10014350mg [Citrus clementina]
9 Hb_005892_020 0.161022291 - - PREDICTED: uncharacterized protein LOC105632170 isoform X1 [Jatropha curcas]
10 Hb_001221_140 0.1636242516 - - DNA binding protein, putative [Ricinus communis]
11 Hb_002370_030 0.1671651427 - - PREDICTED: uncharacterized protein LOC105636715 [Jatropha curcas]
12 Hb_012738_030 0.167478577 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004657_030 0.17262895 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX14 [Jatropha curcas]
14 Hb_002260_080 0.1729665932 - - Aldehyde dehydrogenase family 6 member B2 [Morus notabilis]
15 Hb_007456_040 0.1737127855 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B [Jatropha curcas]
16 Hb_008484_010 0.1764343306 - - hypothetical protein B456_008G050700 [Gossypium raimondii]
17 Hb_002902_080 0.1764942793 - - PREDICTED: uncharacterized protein LOC105639821 [Jatropha curcas]
18 Hb_031931_020 0.1766062158 - - Minor histocompatibility antigen H13, putative [Ricinus communis]
19 Hb_062558_010 0.1774168566 - - PREDICTED: L-2-hydroxyglutarate dehydrogenase, mitochondrial isoform X1 [Populus euphratica]
20 Hb_074197_020 0.1774367947 - - PREDICTED: uncharacterized protein LOC105645948 [Jatropha curcas]

Gene co-expression network

sample Hb_003471_020 Hb_003471_020 Hb_004040_040 Hb_004040_040 Hb_003471_020--Hb_004040_040 Hb_148131_010 Hb_148131_010 Hb_003471_020--Hb_148131_010 Hb_027136_010 Hb_027136_010 Hb_003471_020--Hb_027136_010 Hb_150346_010 Hb_150346_010 Hb_003471_020--Hb_150346_010 Hb_000424_150 Hb_000424_150 Hb_003471_020--Hb_000424_150 Hb_002814_060 Hb_002814_060 Hb_003471_020--Hb_002814_060 Hb_002370_030 Hb_002370_030 Hb_004040_040--Hb_002370_030 Hb_004040_040--Hb_027136_010 Hb_030736_070 Hb_030736_070 Hb_004040_040--Hb_030736_070 Hb_054885_020 Hb_054885_020 Hb_004040_040--Hb_054885_020 Hb_004040_040--Hb_150346_010 Hb_007186_020 Hb_007186_020 Hb_004040_040--Hb_007186_020 Hb_148131_010--Hb_002370_030 Hb_148131_010--Hb_004040_040 Hb_001386_010 Hb_001386_010 Hb_148131_010--Hb_001386_010 Hb_062558_010 Hb_062558_010 Hb_148131_010--Hb_062558_010 Hb_181441_010 Hb_181441_010 Hb_148131_010--Hb_181441_010 Hb_027136_010--Hb_150346_010 Hb_000635_200 Hb_000635_200 Hb_027136_010--Hb_000635_200 Hb_002375_110 Hb_002375_110 Hb_027136_010--Hb_002375_110 Hb_178968_050 Hb_178968_050 Hb_027136_010--Hb_178968_050 Hb_000260_780 Hb_000260_780 Hb_027136_010--Hb_000260_780 Hb_150346_010--Hb_000260_780 Hb_000284_230 Hb_000284_230 Hb_150346_010--Hb_000284_230 Hb_150346_010--Hb_178968_050 Hb_000205_280 Hb_000205_280 Hb_150346_010--Hb_000205_280 Hb_000580_050 Hb_000580_050 Hb_150346_010--Hb_000580_050 Hb_074197_020 Hb_074197_020 Hb_000424_150--Hb_074197_020 Hb_000424_150--Hb_002814_060 Hb_002301_310 Hb_002301_310 Hb_000424_150--Hb_002301_310 Hb_000482_150 Hb_000482_150 Hb_000424_150--Hb_000482_150 Hb_003376_260 Hb_003376_260 Hb_000424_150--Hb_003376_260 Hb_007456_040 Hb_007456_040 Hb_002814_060--Hb_007456_040 Hb_086287_010 Hb_086287_010 Hb_002814_060--Hb_086287_010 Hb_006508_030 Hb_006508_030 Hb_002814_060--Hb_006508_030 Hb_002814_060--Hb_074197_020 Hb_001194_020 Hb_001194_020 Hb_002814_060--Hb_001194_020 Hb_002784_030 Hb_002784_030 Hb_002814_060--Hb_002784_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.91057 4.46753 3.91294 9.56055 6.07843 9.86946
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.254858 0.300704 2.85337 8.97404 5.03668

CAGE analysis