Hb_003475_010

Information

Type -
Description -
Location Contig3475: 25108-27582
Sequence    

Annotation

kegg
ID vvi:104879859
description serine/threonine-protein phosphatase 7 long form homolog
nr
ID XP_010942698.1
description PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]
swissprot
ID Q9LNG5
description Serine/threonine-protein phosphatase 7 long form homolog OS=Arabidopsis thaliana GN=At1g48120 PE=2 SV=1
trembl
ID A5BJW1
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008825 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003475_010 0.0 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]
2 Hb_004226_020 0.1396885836 - - -
3 Hb_004968_100 0.1444098182 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]
4 Hb_004116_200 0.1660825121 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase [Jatropha curcas]
5 Hb_000049_310 0.1707164808 - - Myosin-J heavy chain, partial [Glycine soja]
6 Hb_000001_140 0.1764300313 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12 isoform X1 [Jatropha curcas]
7 Hb_005043_010 0.1771073228 - - calcium ion binding protein, putative [Ricinus communis]
8 Hb_000009_320 0.1798687429 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66631 [Jatropha curcas]
9 Hb_000330_050 0.1804835744 - - Protein yrdA, putative [Ricinus communis]
10 Hb_002045_130 0.1810667025 transcription factor TF Family: bZIP PREDICTED: light-inducible protein CPRF2 [Jatropha curcas]
11 Hb_001500_040 0.1829553435 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X2 [Jatropha curcas]
12 Hb_000907_080 0.1883265098 - - PREDICTED: uncharacterized protein LOC105640819 [Jatropha curcas]
13 Hb_000318_020 0.1896845382 - - PREDICTED: sodium channel modifier 1-like [Jatropha curcas]
14 Hb_008643_100 0.1896909777 - - PREDICTED: uncharacterized protein LOC105629528 [Jatropha curcas]
15 Hb_000563_550 0.1900116475 - - PREDICTED: glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a [Jatropha curcas]
16 Hb_163145_020 0.1909797457 - - PREDICTED: protein phosphatase 2C 29 [Jatropha curcas]
17 Hb_166646_010 0.1919632657 - - hypothetical protein POPTR_0010s22200g [Populus trichocarpa]
18 Hb_001454_090 0.192176063 - - PREDICTED: alanyl-tRNA editing protein Aarsd1 isoform X1 [Jatropha curcas]
19 Hb_000200_340 0.1922655529 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
20 Hb_006076_010 0.1948626803 - - PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]

Gene co-expression network

sample Hb_003475_010 Hb_003475_010 Hb_004226_020 Hb_004226_020 Hb_003475_010--Hb_004226_020 Hb_004968_100 Hb_004968_100 Hb_003475_010--Hb_004968_100 Hb_004116_200 Hb_004116_200 Hb_003475_010--Hb_004116_200 Hb_000049_310 Hb_000049_310 Hb_003475_010--Hb_000049_310 Hb_000001_140 Hb_000001_140 Hb_003475_010--Hb_000001_140 Hb_005043_010 Hb_005043_010 Hb_003475_010--Hb_005043_010 Hb_004226_020--Hb_004968_100 Hb_034299_060 Hb_034299_060 Hb_004226_020--Hb_034299_060 Hb_005357_150 Hb_005357_150 Hb_004226_020--Hb_005357_150 Hb_163145_020 Hb_163145_020 Hb_004226_020--Hb_163145_020 Hb_000429_170 Hb_000429_170 Hb_004226_020--Hb_000429_170 Hb_002973_080 Hb_002973_080 Hb_004226_020--Hb_002973_080 Hb_006076_010 Hb_006076_010 Hb_004968_100--Hb_006076_010 Hb_000062_560 Hb_000062_560 Hb_004968_100--Hb_000062_560 Hb_001221_170 Hb_001221_170 Hb_004968_100--Hb_001221_170 Hb_002518_140 Hb_002518_140 Hb_004968_100--Hb_002518_140 Hb_002045_130 Hb_002045_130 Hb_004116_200--Hb_002045_130 Hb_003750_080 Hb_003750_080 Hb_004116_200--Hb_003750_080 Hb_004116_200--Hb_163145_020 Hb_000635_220 Hb_000635_220 Hb_004116_200--Hb_000635_220 Hb_001500_040 Hb_001500_040 Hb_004116_200--Hb_001500_040 Hb_001856_020 Hb_001856_020 Hb_004116_200--Hb_001856_020 Hb_000009_320 Hb_000009_320 Hb_000049_310--Hb_000009_320 Hb_001956_200 Hb_001956_200 Hb_000049_310--Hb_001956_200 Hb_004907_110 Hb_004907_110 Hb_000049_310--Hb_004907_110 Hb_000280_080 Hb_000280_080 Hb_000049_310--Hb_000280_080 Hb_000061_460 Hb_000061_460 Hb_000049_310--Hb_000061_460 Hb_012325_020 Hb_012325_020 Hb_000049_310--Hb_012325_020 Hb_002006_090 Hb_002006_090 Hb_000001_140--Hb_002006_090 Hb_000907_080 Hb_000907_080 Hb_000001_140--Hb_000907_080 Hb_001329_300 Hb_001329_300 Hb_000001_140--Hb_001329_300 Hb_001051_100 Hb_001051_100 Hb_000001_140--Hb_001051_100 Hb_008695_210 Hb_008695_210 Hb_000001_140--Hb_008695_210 Hb_000001_140--Hb_163145_020 Hb_000563_550 Hb_000563_550 Hb_005043_010--Hb_000563_550 Hb_005188_090 Hb_005188_090 Hb_005043_010--Hb_005188_090 Hb_007416_270 Hb_007416_270 Hb_005043_010--Hb_007416_270 Hb_000236_140 Hb_000236_140 Hb_005043_010--Hb_000236_140 Hb_000172_560 Hb_000172_560 Hb_005043_010--Hb_000172_560 Hb_000705_240 Hb_000705_240 Hb_005043_010--Hb_000705_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.207944 0.26109 0.211777 0.0508543 0.853274 0.268184
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.573117 0.261044 1.02665 0.284062 0.198835

CAGE analysis