Hb_003494_020

Information

Type -
Description -
Location Contig3494: 13727-17318
Sequence    

Annotation

kegg
ID rcu:RCOM_0703820
description ATP-dependent RNA and DNA helicase, putative
nr
ID XP_002524370.1
description ATP-dependent RNA and DNA helicase, putative [Ricinus communis]
swissprot
ID F4KFV7
description ATP-dependent RNA helicase SUV3L, mitochondrial OS=Arabidopsis thaliana GN=At5g39840 PE=3 SV=1
trembl
ID B9SEF1
description ATP-dependent RNA and DNA helicase, putative OS=Ricinus communis GN=RCOM_0703820 PE=4 SV=1
Gene Ontology
ID GO:0016817
description atp-dependent rna helicase mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36336: 13859-13995 , PASA_asmbl_36337: 14158-14368 , PASA_asmbl_36338: 14418-15757 , PASA_asmbl_36339: 14418-19091 , PASA_asmbl_36340: 15760-16027 , PASA_asmbl_36341: 16048-19091
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003494_020 0.0 - - ATP-dependent RNA and DNA helicase, putative [Ricinus communis]
2 Hb_000174_270 0.0464795965 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X1 [Jatropha curcas]
3 Hb_002234_170 0.0490544719 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1 [Jatropha curcas]
4 Hb_000028_130 0.0544663364 - - PREDICTED: uncharacterized protein LOC105645303 isoform X1 [Jatropha curcas]
5 Hb_000258_160 0.0552235455 - - conserved hypothetical protein [Ricinus communis]
6 Hb_062226_070 0.0588637896 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 4 isoform X1 [Jatropha curcas]
7 Hb_002818_030 0.0625674351 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
8 Hb_002205_250 0.0636084643 - - PREDICTED: probable inactive serine/threonine-protein kinase scy1 isoform X1 [Jatropha curcas]
9 Hb_003168_110 0.0647056491 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: lysine-specific histone demethylase 1 homolog 1 [Jatropha curcas]
10 Hb_003206_130 0.0653238241 - - PREDICTED: protein NRDE2 homolog [Jatropha curcas]
11 Hb_001004_060 0.0655823572 - - PREDICTED: uncharacterized protein LOC105630220 isoform X4 [Jatropha curcas]
12 Hb_031042_050 0.0660589399 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
13 Hb_000614_210 0.0669751199 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-1-like isoform X1 [Jatropha curcas]
14 Hb_000684_250 0.0685257133 - - PREDICTED: uncharacterized protein LOC105642172 [Jatropha curcas]
15 Hb_004182_050 0.0691942841 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X2 [Jatropha curcas]
16 Hb_019863_070 0.0697063995 - - PREDICTED: regulatory-associated protein of TOR 1 isoform X1 [Jatropha curcas]
17 Hb_001999_290 0.0697384837 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 7, chloroplastic-like [Jatropha curcas]
18 Hb_000107_490 0.0699342537 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
19 Hb_001716_020 0.0702824321 - - hydrolase, putative [Ricinus communis]
20 Hb_000792_010 0.070676005 - - PREDICTED: mRNA-capping enzyme [Jatropha curcas]

Gene co-expression network

sample Hb_003494_020 Hb_003494_020 Hb_000174_270 Hb_000174_270 Hb_003494_020--Hb_000174_270 Hb_002234_170 Hb_002234_170 Hb_003494_020--Hb_002234_170 Hb_000028_130 Hb_000028_130 Hb_003494_020--Hb_000028_130 Hb_000258_160 Hb_000258_160 Hb_003494_020--Hb_000258_160 Hb_062226_070 Hb_062226_070 Hb_003494_020--Hb_062226_070 Hb_002818_030 Hb_002818_030 Hb_003494_020--Hb_002818_030 Hb_001999_290 Hb_001999_290 Hb_000174_270--Hb_001999_290 Hb_000174_270--Hb_000028_130 Hb_000174_270--Hb_062226_070 Hb_000037_190 Hb_000037_190 Hb_000174_270--Hb_000037_190 Hb_001635_120 Hb_001635_120 Hb_000174_270--Hb_001635_120 Hb_002783_040 Hb_002783_040 Hb_002234_170--Hb_002783_040 Hb_000049_260 Hb_000049_260 Hb_002234_170--Hb_000049_260 Hb_002798_070 Hb_002798_070 Hb_002234_170--Hb_002798_070 Hb_006649_050 Hb_006649_050 Hb_002234_170--Hb_006649_050 Hb_000574_400 Hb_000574_400 Hb_002234_170--Hb_000574_400 Hb_031042_050 Hb_031042_050 Hb_000028_130--Hb_031042_050 Hb_000028_130--Hb_001635_120 Hb_000017_220 Hb_000017_220 Hb_000028_130--Hb_000017_220 Hb_001716_020 Hb_001716_020 Hb_000028_130--Hb_001716_020 Hb_001473_110 Hb_001473_110 Hb_000028_130--Hb_001473_110 Hb_000041_110 Hb_000041_110 Hb_000258_160--Hb_000041_110 Hb_019863_070 Hb_019863_070 Hb_000258_160--Hb_019863_070 Hb_000340_530 Hb_000340_530 Hb_000258_160--Hb_000340_530 Hb_004079_060 Hb_004079_060 Hb_000258_160--Hb_004079_060 Hb_162275_050 Hb_162275_050 Hb_000258_160--Hb_162275_050 Hb_062226_070--Hb_000028_130 Hb_062226_070--Hb_004079_060 Hb_062226_070--Hb_001999_290 Hb_005582_040 Hb_005582_040 Hb_062226_070--Hb_005582_040 Hb_004916_010 Hb_004916_010 Hb_002818_030--Hb_004916_010 Hb_002818_030--Hb_019863_070 Hb_003849_110 Hb_003849_110 Hb_002818_030--Hb_003849_110 Hb_002818_030--Hb_000049_260 Hb_002818_030--Hb_002798_070 Hb_000069_310 Hb_000069_310 Hb_002818_030--Hb_000069_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.77478 7.1407 3.69985 5.24658 4.9073 5.41411
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.36499 4.73027 6.11044 4.84668 5.93838

CAGE analysis