Hb_003494_040

Information

Type transcription factor
Description TF Family: NAC
Location Contig3494: 32080-33827
Sequence    

Annotation

kegg
ID pop:POPTR_0017s11830g
description POPTRDRAFT_778489; hypothetical protein
nr
ID XP_012084694.1
description PREDICTED: protein FEZ [Jatropha curcas]
swissprot
ID Q9ZVH0
description Protein FEZ OS=Arabidopsis thaliana GN=FEZ PE=2 SV=1
trembl
ID R4N5L2
description NAC transcription factor 031 OS=Jatropha curcas GN=JCGZ_19841 PE=4 SV=1
Gene Ontology
ID GO:0003677
description protein fez

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003494_040 0.0 transcription factor TF Family: NAC PREDICTED: protein FEZ [Jatropha curcas]
2 Hb_009296_050 0.2416379663 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
3 Hb_007520_070 0.2583536529 - - PREDICTED: uncharacterized protein LOC105155919 [Sesamum indicum]
4 Hb_007042_010 0.2633915465 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
5 Hb_121992_010 0.2719668936 - - hypothetical protein POPTR_0005s04441g [Populus trichocarpa]
6 Hb_026698_030 0.2722166443 - - hypothetical protein CISIN_1g030953mg [Citrus sinensis]
7 Hb_012788_010 0.2755658274 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
8 Hb_012404_080 0.2777955227 - - PREDICTED: ABC transporter G family member 34-like [Jatropha curcas]
9 Hb_000454_160 0.2779272013 - - amidophosphoribosyltransferase, putative [Ricinus communis]
10 Hb_173808_010 0.2797548047 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
11 Hb_011287_070 0.2804316314 - - -
12 Hb_002241_030 0.2845404175 - - Retrotransposon protein, putative [Theobroma cacao]
13 Hb_005016_120 0.2877320032 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
14 Hb_060658_010 0.2889887978 desease resistance Gene Name: NB-ARC NBS-LRR resistance protein RGH1 [Manihot esculenta]
15 Hb_007546_030 0.2890571072 - - transcription cofactor, putative [Ricinus communis]
16 Hb_003216_070 0.2935618538 - - hypothetical protein RCOM_0483300 [Ricinus communis]
17 Hb_011609_210 0.2939477309 - - Uncharacterized protein TCM_011393 [Theobroma cacao]
18 Hb_003938_110 0.2940371544 - - polyprotein [Ananas comosus]
19 Hb_007218_160 0.2971506962 - - PREDICTED: uncharacterized protein LOC105108358 [Populus euphratica]
20 Hb_041813_010 0.2977094377 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003494_040 Hb_003494_040 Hb_009296_050 Hb_009296_050 Hb_003494_040--Hb_009296_050 Hb_007520_070 Hb_007520_070 Hb_003494_040--Hb_007520_070 Hb_007042_010 Hb_007042_010 Hb_003494_040--Hb_007042_010 Hb_121992_010 Hb_121992_010 Hb_003494_040--Hb_121992_010 Hb_026698_030 Hb_026698_030 Hb_003494_040--Hb_026698_030 Hb_012788_010 Hb_012788_010 Hb_003494_040--Hb_012788_010 Hb_065500_010 Hb_065500_010 Hb_009296_050--Hb_065500_010 Hb_004319_060 Hb_004319_060 Hb_009296_050--Hb_004319_060 Hb_003938_110 Hb_003938_110 Hb_009296_050--Hb_003938_110 Hb_012404_080 Hb_012404_080 Hb_009296_050--Hb_012404_080 Hb_009296_050--Hb_012788_010 Hb_009296_050--Hb_121992_010 Hb_041813_010 Hb_041813_010 Hb_007520_070--Hb_041813_010 Hb_062317_020 Hb_062317_020 Hb_007520_070--Hb_062317_020 Hb_000968_070 Hb_000968_070 Hb_007520_070--Hb_000968_070 Hb_001320_020 Hb_001320_020 Hb_007520_070--Hb_001320_020 Hb_000076_050 Hb_000076_050 Hb_007520_070--Hb_000076_050 Hb_102602_020 Hb_102602_020 Hb_007520_070--Hb_102602_020 Hb_007802_020 Hb_007802_020 Hb_007042_010--Hb_007802_020 Hb_126103_010 Hb_126103_010 Hb_007042_010--Hb_126103_010 Hb_001568_110 Hb_001568_110 Hb_007042_010--Hb_001568_110 Hb_116349_040 Hb_116349_040 Hb_007042_010--Hb_116349_040 Hb_000840_040 Hb_000840_040 Hb_007042_010--Hb_000840_040 Hb_001304_130 Hb_001304_130 Hb_121992_010--Hb_001304_130 Hb_136880_010 Hb_136880_010 Hb_121992_010--Hb_136880_010 Hb_121992_010--Hb_012788_010 Hb_147218_010 Hb_147218_010 Hb_121992_010--Hb_147218_010 Hb_086336_010 Hb_086336_010 Hb_121992_010--Hb_086336_010 Hb_001485_010 Hb_001485_010 Hb_121992_010--Hb_001485_010 Hb_008803_040 Hb_008803_040 Hb_026698_030--Hb_008803_040 Hb_002943_010 Hb_002943_010 Hb_026698_030--Hb_002943_010 Hb_008226_030 Hb_008226_030 Hb_026698_030--Hb_008226_030 Hb_000404_040 Hb_000404_040 Hb_026698_030--Hb_000404_040 Hb_032718_010 Hb_032718_010 Hb_026698_030--Hb_032718_010 Hb_004574_040 Hb_004574_040 Hb_026698_030--Hb_004574_040 Hb_012788_010--Hb_136880_010 Hb_012788_010--Hb_001304_130 Hb_012788_010--Hb_001485_010 Hb_134279_010 Hb_134279_010 Hb_012788_010--Hb_134279_010 Hb_053125_010 Hb_053125_010 Hb_012788_010--Hb_053125_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0172032 0.177378 0 0.0706716 0 0.0358603
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.039278 0 0.0575559 0.0865971 0.256156

CAGE analysis