Hb_003494_050

Information

Type -
Description -
Location Contig3494: 35372-37603
Sequence    

Annotation

kegg
ID pmum:103338517
description 60S ribosomal protein L34-like
nr
ID XP_007209770.1
description hypothetical protein PRUPE_ppa013459mg [Prunus persica]
swissprot
ID P40590
description 60S ribosomal protein L34 OS=Pisum sativum GN=RPL34 PE=2 SV=1
trembl
ID M5WB76
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013459mg PE=4 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l34

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36345: 35366-37522
cDNA
(Sanger)
(ID:Location)		 036_L10.ab1: 35405-37522 , 050_L23.ab1: 35404-37522

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003494_050 0.0 - - hypothetical protein PRUPE_ppa013459mg [Prunus persica]
2 Hb_000735_090 0.0685790668 - - PREDICTED: 40S ribosomal protein S8-like [Gossypium raimondii]
3 Hb_007747_050 0.0718342964 - - Peptidyl-prolyl cis-trans isomerase cypE, putative [Ricinus communis]
4 Hb_006573_020 0.0756122428 - - PREDICTED: 40S ribosomal protein S10-like [Jatropha curcas]
5 Hb_001373_060 0.0781308997 - - PREDICTED: structure-specific endonuclease subunit slx1 [Jatropha curcas]
6 Hb_005269_080 0.0832496108 - - protein with unknown function [Ricinus communis]
7 Hb_002811_170 0.0852289715 - - PREDICTED: 40S ribosomal protein S3a-1 [Jatropha curcas]
8 Hb_000085_350 0.0862475787 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-2-like isoform X1 [Jatropha curcas]
9 Hb_000676_160 0.0872579774 - - folate carrier protein, putative [Ricinus communis]
10 Hb_000215_330 0.0875725827 - - PREDICTED: AP-4 complex subunit sigma [Jatropha curcas]
11 Hb_000836_470 0.0876853085 - - -
12 Hb_005306_070 0.088105517 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
13 Hb_007065_010 0.0895353543 - - hypothetical protein Csa_3G379730 [Cucumis sativus]
14 Hb_003376_190 0.0897040051 - - syntaxin, putative [Ricinus communis]
15 Hb_000155_160 0.0906112959 - - hypothetical protein POPTR_0011s05880g [Populus trichocarpa]
16 Hb_002798_020 0.090782433 - - PREDICTED: uncharacterized protein LOC105647735 [Jatropha curcas]
17 Hb_001863_430 0.0925314337 - - PREDICTED: probable protein phosphatase 2C 9 [Populus euphratica]
18 Hb_014720_040 0.0926650209 - - PREDICTED: 50S ribosomal protein L12, chloroplastic [Jatropha curcas]
19 Hb_174865_010 0.0941748685 - - transcription initiation factor iia (tfiia), gamma chain, putative [Ricinus communis]
20 Hb_003018_020 0.0964226961 - - PREDICTED: uncharacterized protein LOC105628697 [Jatropha curcas]

Gene co-expression network

sample Hb_003494_050 Hb_003494_050 Hb_000735_090 Hb_000735_090 Hb_003494_050--Hb_000735_090 Hb_007747_050 Hb_007747_050 Hb_003494_050--Hb_007747_050 Hb_006573_020 Hb_006573_020 Hb_003494_050--Hb_006573_020 Hb_001373_060 Hb_001373_060 Hb_003494_050--Hb_001373_060 Hb_005269_080 Hb_005269_080 Hb_003494_050--Hb_005269_080 Hb_002811_170 Hb_002811_170 Hb_003494_050--Hb_002811_170 Hb_000735_090--Hb_007747_050 Hb_001989_090 Hb_001989_090 Hb_000735_090--Hb_001989_090 Hb_007065_010 Hb_007065_010 Hb_000735_090--Hb_007065_010 Hb_000016_080 Hb_000016_080 Hb_000735_090--Hb_000016_080 Hb_000085_350 Hb_000085_350 Hb_000735_090--Hb_000085_350 Hb_007747_050--Hb_002811_170 Hb_000419_020 Hb_000419_020 Hb_007747_050--Hb_000419_020 Hb_007747_050--Hb_000085_350 Hb_001863_430 Hb_001863_430 Hb_007747_050--Hb_001863_430 Hb_000808_190 Hb_000808_190 Hb_006573_020--Hb_000808_190 Hb_001057_040 Hb_001057_040 Hb_006573_020--Hb_001057_040 Hb_000002_380 Hb_000002_380 Hb_006573_020--Hb_000002_380 Hb_186982_040 Hb_186982_040 Hb_006573_020--Hb_186982_040 Hb_000005_090 Hb_000005_090 Hb_006573_020--Hb_000005_090 Hb_003633_060 Hb_003633_060 Hb_001373_060--Hb_003633_060 Hb_004057_010 Hb_004057_010 Hb_001373_060--Hb_004057_010 Hb_000005_300 Hb_000005_300 Hb_001373_060--Hb_000005_300 Hb_006198_070 Hb_006198_070 Hb_001373_060--Hb_006198_070 Hb_001431_080 Hb_001431_080 Hb_001373_060--Hb_001431_080 Hb_002303_060 Hb_002303_060 Hb_005269_080--Hb_002303_060 Hb_000922_040 Hb_000922_040 Hb_005269_080--Hb_000922_040 Hb_000254_050 Hb_000254_050 Hb_005269_080--Hb_000254_050 Hb_000384_120 Hb_000384_120 Hb_005269_080--Hb_000384_120 Hb_001053_140 Hb_001053_140 Hb_005269_080--Hb_001053_140 Hb_000701_100 Hb_000701_100 Hb_005269_080--Hb_000701_100 Hb_000836_470 Hb_000836_470 Hb_002811_170--Hb_000836_470 Hb_001931_010 Hb_001931_010 Hb_002811_170--Hb_001931_010 Hb_002811_170--Hb_001863_430 Hb_001728_030 Hb_001728_030 Hb_002811_170--Hb_001728_030 Hb_001016_150 Hb_001016_150 Hb_002811_170--Hb_001016_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.6983 24.4972 62.7623 93.0764 33.7587 61.2824
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
87.6915 218.454 59.7044 62.0376 59.3502

CAGE analysis