Hb_003494_060

Information

Type -
Description -
Location Contig3494: 48579-52673
Sequence    

Annotation

kegg
ID rcu:RCOM_0170220
description 60S ribosomal protein L34, putative
nr
ID XP_012084697.1
description PREDICTED: uncharacterized protein LOC105644062 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9T740
description 60S ribosomal protein L34, putative OS=Ricinus communis GN=RCOM_0170220 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36348: 49210-50991 , PASA_asmbl_36349: 49775-51214
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003494_060 0.0 - - PREDICTED: uncharacterized protein LOC105644062 isoform X1 [Jatropha curcas]
2 Hb_001141_360 0.0836466125 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
3 Hb_001865_060 0.1003092149 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
4 Hb_012725_040 0.1134472592 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
5 Hb_000483_040 0.1150253495 - - Cell division protein ftsH, putative [Ricinus communis]
6 Hb_009838_060 0.1197518932 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000062_080 0.119997884 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR11-like [Jatropha curcas]
8 Hb_003120_050 0.1212488221 - - PREDICTED: uncharacterized protein LOC105635312 [Jatropha curcas]
9 Hb_005656_140 0.1291440633 transcription factor TF Family: bZIP PREDICTED: basic leucine zipper 9 [Jatropha curcas]
10 Hb_185513_010 0.1320738003 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000976_290 0.1321440976 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105646228 [Jatropha curcas]
12 Hb_000010_350 0.1378711253 - - PREDICTED: programmed cell death protein 4-like [Jatropha curcas]
13 Hb_009897_020 0.1405322678 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
14 Hb_001258_150 0.1429136308 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
15 Hb_001489_120 0.1445397182 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
16 Hb_002760_040 0.1455696945 - - PREDICTED: uncharacterized protein LOC105641234 [Jatropha curcas]
17 Hb_004800_190 0.1462191953 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 4 [Jatropha curcas]
18 Hb_004032_310 0.1488295509 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 14 [Jatropha curcas]
19 Hb_001546_110 0.1492355629 - - PREDICTED: leucine-rich repeat extensin-like protein 3 [Jatropha curcas]
20 Hb_012760_010 0.151604151 - - PREDICTED: uncharacterized protein At4g08330, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_003494_060 Hb_003494_060 Hb_001141_360 Hb_001141_360 Hb_003494_060--Hb_001141_360 Hb_001865_060 Hb_001865_060 Hb_003494_060--Hb_001865_060 Hb_012725_040 Hb_012725_040 Hb_003494_060--Hb_012725_040 Hb_000483_040 Hb_000483_040 Hb_003494_060--Hb_000483_040 Hb_009838_060 Hb_009838_060 Hb_003494_060--Hb_009838_060 Hb_000062_080 Hb_000062_080 Hb_003494_060--Hb_000062_080 Hb_001141_360--Hb_001865_060 Hb_001141_360--Hb_000062_080 Hb_003120_050 Hb_003120_050 Hb_001141_360--Hb_003120_050 Hb_001141_360--Hb_012725_040 Hb_012226_010 Hb_012226_010 Hb_001141_360--Hb_012226_010 Hb_001865_060--Hb_012725_040 Hb_001865_060--Hb_000062_080 Hb_002485_040 Hb_002485_040 Hb_001865_060--Hb_002485_040 Hb_004032_310 Hb_004032_310 Hb_001865_060--Hb_004032_310 Hb_185513_010 Hb_185513_010 Hb_012725_040--Hb_185513_010 Hb_006111_030 Hb_006111_030 Hb_012725_040--Hb_006111_030 Hb_001258_150 Hb_001258_150 Hb_012725_040--Hb_001258_150 Hb_028207_040 Hb_028207_040 Hb_000483_040--Hb_028207_040 Hb_012760_010 Hb_012760_010 Hb_000483_040--Hb_012760_010 Hb_000069_230 Hb_000069_230 Hb_000483_040--Hb_000069_230 Hb_001369_570 Hb_001369_570 Hb_000483_040--Hb_001369_570 Hb_003078_050 Hb_003078_050 Hb_000483_040--Hb_003078_050 Hb_009838_060--Hb_001141_360 Hb_009838_060--Hb_012760_010 Hb_005656_140 Hb_005656_140 Hb_009838_060--Hb_005656_140 Hb_001546_110 Hb_001546_110 Hb_009838_060--Hb_001546_110 Hb_009838_060--Hb_185513_010 Hb_127599_010 Hb_127599_010 Hb_000062_080--Hb_127599_010 Hb_000448_060 Hb_000448_060 Hb_000062_080--Hb_000448_060 Hb_000802_190 Hb_000802_190 Hb_000062_080--Hb_000802_190 Hb_000010_350 Hb_000010_350 Hb_000062_080--Hb_000010_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.881 37.1676 4.55974 5.72288 6.13608 4.06902
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.7303 4.13056 3.32963 4.62895 2.65184

CAGE analysis