Hb_003494_090

Information

Type transcription factor
Description TF Family: MYB
Location Contig3494: 92963-94428
Sequence    

Annotation

kegg
ID pop:POPTR_0017s11880g
description POPTRDRAFT_835698; myb family transcription factor family protein
nr
ID XP_002323853.1
description myb family transcription factor family protein [Populus trichocarpa]
swissprot
ID P81392
description Myb-related protein 306 OS=Antirrhinum majus GN=MYB306 PE=2 SV=1
trembl
ID B9IJX2
description Myb family transcription factor family protein OS=Populus trichocarpa GN=POPTR_0017s11880g PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb-related protein 306-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36351: 93011-94008 , PASA_asmbl_36352: 94220-94442
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003494_090 0.0 transcription factor TF Family: MYB myb family transcription factor family protein [Populus trichocarpa]
2 Hb_002007_220 0.0671252467 - - PREDICTED: signal recognition particle 43 kDa protein, chloroplastic [Jatropha curcas]
3 Hb_000460_040 0.0726499878 - - PREDICTED: protein phosphatase 2C 57 [Jatropha curcas]
4 Hb_002852_010 0.0727061551 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
5 Hb_005329_010 0.0785020423 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 [Jatropha curcas]
6 Hb_033363_040 0.0815083404 - - PREDICTED: probable galacturonosyltransferase-like 3 [Jatropha curcas]
7 Hb_018591_020 0.0816026134 - - Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast precursor, putative [Ricinus communis]
8 Hb_001699_140 0.0836568629 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
9 Hb_000254_130 0.0891198314 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
10 Hb_000155_020 0.0894815059 - - PREDICTED: triose phosphate/phosphate translocator TPT, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_004970_060 0.0897467922 - - PREDICTED: uncharacterized protein LOC100259061 [Vitis vinifera]
12 Hb_001159_050 0.0901231141 - - PREDICTED: uncharacterized protein LOC105645952 [Jatropha curcas]
13 Hb_003025_160 0.0903986009 - - Protein HVA22, putative [Ricinus communis]
14 Hb_002259_090 0.090664505 - - PREDICTED: ABC transporter G family member 11 [Jatropha curcas]
15 Hb_000270_090 0.0909670816 - - nitrate transporter, putative [Ricinus communis]
16 Hb_007597_030 0.0938342507 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_001975_100 0.0966295901 - - chlorophyll a-b binding protein 151, chloroplastic [Jatropha curcas]
18 Hb_001321_010 0.0967161124 - - HIGH-CHLOROPHYLL-FLUORESCENCE 101 family protein [Populus trichocarpa]
19 Hb_005063_030 0.0971831517 - - Photosystem II reaction center W protein, chloroplast precursor, putative [Ricinus communis]
20 Hb_002272_210 0.0973939896 - - PREDICTED: UPF0603 protein At1g54780, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_003494_090 Hb_003494_090 Hb_002007_220 Hb_002007_220 Hb_003494_090--Hb_002007_220 Hb_000460_040 Hb_000460_040 Hb_003494_090--Hb_000460_040 Hb_002852_010 Hb_002852_010 Hb_003494_090--Hb_002852_010 Hb_005329_010 Hb_005329_010 Hb_003494_090--Hb_005329_010 Hb_033363_040 Hb_033363_040 Hb_003494_090--Hb_033363_040 Hb_018591_020 Hb_018591_020 Hb_003494_090--Hb_018591_020 Hb_002007_220--Hb_018591_020 Hb_000155_020 Hb_000155_020 Hb_002007_220--Hb_000155_020 Hb_002007_220--Hb_033363_040 Hb_000270_090 Hb_000270_090 Hb_002007_220--Hb_000270_090 Hb_001321_010 Hb_001321_010 Hb_002007_220--Hb_001321_010 Hb_000088_230 Hb_000088_230 Hb_000460_040--Hb_000088_230 Hb_000460_040--Hb_005329_010 Hb_001699_140 Hb_001699_140 Hb_000460_040--Hb_001699_140 Hb_007477_060 Hb_007477_060 Hb_000460_040--Hb_007477_060 Hb_005211_080 Hb_005211_080 Hb_000460_040--Hb_005211_080 Hb_005054_120 Hb_005054_120 Hb_002852_010--Hb_005054_120 Hb_000077_380 Hb_000077_380 Hb_002852_010--Hb_000077_380 Hb_002259_090 Hb_002259_090 Hb_002852_010--Hb_002259_090 Hb_002852_010--Hb_001699_140 Hb_005063_030 Hb_005063_030 Hb_002852_010--Hb_005063_030 Hb_005329_010--Hb_005211_080 Hb_001766_160 Hb_001766_160 Hb_005329_010--Hb_001766_160 Hb_005329_010--Hb_000088_230 Hb_001006_150 Hb_001006_150 Hb_005329_010--Hb_001006_150 Hb_001322_120 Hb_001322_120 Hb_005329_010--Hb_001322_120 Hb_033363_040--Hb_018591_020 Hb_003025_160 Hb_003025_160 Hb_033363_040--Hb_003025_160 Hb_004970_060 Hb_004970_060 Hb_033363_040--Hb_004970_060 Hb_033363_040--Hb_002259_090 Hb_000046_120 Hb_000046_120 Hb_018591_020--Hb_000046_120 Hb_025557_060 Hb_025557_060 Hb_018591_020--Hb_025557_060 Hb_000608_290 Hb_000608_290 Hb_018591_020--Hb_000608_290 Hb_000002_500 Hb_000002_500 Hb_018591_020--Hb_000002_500
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0212894 0.302052 1.69724 0.838558 0 0.0187446
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0462084 2.43622

CAGE analysis