Hb_003494_100

Information

Type transcription factor
Description TF Family: zf-HD
Location Contig3494: 120885-121581
Sequence    

Annotation

kegg
ID tcc:TCM_018545
description Mini zinc finger 2 isoform 1
nr
ID XP_007032530.1
description Mini zinc finger 2 isoform 1 [Theobroma cacao]
swissprot
ID Q9LJW5
description Mini zinc finger protein 2 OS=Arabidopsis thaliana GN=MIF2 PE=1 SV=1
trembl
ID A0A061EEU8
description Mini zinc finger 2 isoform 1 OS=Theobroma cacao GN=TCM_018545 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003494_100 0.0 transcription factor TF Family: zf-HD Mini zinc finger 2 isoform 1 [Theobroma cacao]
2 Hb_002368_120 0.0800298583 - - hypothetical protein VITISV_033181 [Vitis vinifera]
3 Hb_154146_010 0.1080966588 - - hypothetical protein JCGZ_00346 [Jatropha curcas]
4 Hb_001304_150 0.1081621067 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
5 Hb_000313_240 0.1092469142 - - hypothetical protein RCOM_0377590 [Ricinus communis]
6 Hb_012090_010 0.1093246089 - - hypothetical protein RCOM_0904330 [Ricinus communis]
7 Hb_000331_600 0.1097803664 - - PREDICTED: probable Ufm1-specific protease [Jatropha curcas]
8 Hb_001278_010 0.1097994433 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000355_020 0.1102384467 - - -
10 Hb_002092_050 0.1102813937 - - hypothetical protein JCGZ_05877 [Jatropha curcas]
11 Hb_065272_010 0.1111975313 - - hypothetical protein JCGZ_06349 [Jatropha curcas]
12 Hb_020712_020 0.1124020265 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATX4 [Elaeis guineensis]
13 Hb_000029_240 0.1125082971 - - PREDICTED: pre-mRNA-splicing factor SLU7-A-like [Elaeis guineensis]
14 Hb_025161_040 0.1145054197 - - kinase, putative [Ricinus communis]
15 Hb_025526_110 0.1151152794 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Jatropha curcas]
16 Hb_041188_010 0.1162943763 - - PREDICTED: O-acyltransferase WSD1-like [Nicotiana tomentosiformis]
17 Hb_002391_060 0.1187405534 - - PREDICTED: uncharacterized protein LOC100853799 [Vitis vinifera]
18 Hb_051677_010 0.1190697668 - - Uncharacterized protein TCM_017953 [Theobroma cacao]
19 Hb_093084_040 0.1205166146 transcription factor TF Family: LOB hypothetical protein POPTR_0015s09370g [Populus trichocarpa]
20 Hb_007455_010 0.1206318685 - - PREDICTED: uncharacterized protein LOC105800996 [Gossypium raimondii]

Gene co-expression network

sample Hb_003494_100 Hb_003494_100 Hb_002368_120 Hb_002368_120 Hb_003494_100--Hb_002368_120 Hb_154146_010 Hb_154146_010 Hb_003494_100--Hb_154146_010 Hb_001304_150 Hb_001304_150 Hb_003494_100--Hb_001304_150 Hb_000313_240 Hb_000313_240 Hb_003494_100--Hb_000313_240 Hb_012090_010 Hb_012090_010 Hb_003494_100--Hb_012090_010 Hb_000331_600 Hb_000331_600 Hb_003494_100--Hb_000331_600 Hb_002368_120--Hb_154146_010 Hb_002368_120--Hb_001304_150 Hb_002368_120--Hb_000313_240 Hb_002368_120--Hb_012090_010 Hb_002368_120--Hb_000331_600 Hb_002092_050 Hb_002092_050 Hb_002368_120--Hb_002092_050 Hb_154146_010--Hb_001304_150 Hb_154146_010--Hb_000313_240 Hb_154146_010--Hb_012090_010 Hb_154146_010--Hb_000331_600 Hb_001278_010 Hb_001278_010 Hb_154146_010--Hb_001278_010 Hb_154146_010--Hb_002092_050 Hb_001304_150--Hb_000313_240 Hb_001304_150--Hb_012090_010 Hb_001304_150--Hb_000331_600 Hb_001304_150--Hb_002092_050 Hb_065272_010 Hb_065272_010 Hb_001304_150--Hb_065272_010 Hb_000313_240--Hb_012090_010 Hb_000313_240--Hb_000331_600 Hb_000313_240--Hb_002092_050 Hb_000313_240--Hb_065272_010 Hb_012090_010--Hb_000331_600 Hb_012090_010--Hb_002092_050 Hb_012090_010--Hb_065272_010 Hb_000029_240 Hb_000029_240 Hb_012090_010--Hb_000029_240 Hb_000331_600--Hb_002092_050 Hb_000331_600--Hb_065272_010 Hb_000331_600--Hb_000029_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.082377 0.252779 23.4073 0 0.275557
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.33821 0

CAGE analysis