Hb_003494_150

Information

Type -
Description -
Location Contig3494: 156876-159624
Sequence    

Annotation

kegg
ID rcu:RCOM_0100750
description Silicon transporter, putative
nr
ID XP_002534417.1
description Silicon transporter, putative [Ricinus communis]
swissprot
ID Q6Z2T3
description Aquaporin NIP2-1 OS=Oryza sativa subsp. japonica GN=NIP2-1 PE=1 SV=1
trembl
ID B9T848
description Silicon transporter, putative OS=Ricinus communis GN=RCOM_0100750 PE=3 SV=1
Gene Ontology
ID GO:0016020
description aquaporin nip2-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003494_150 0.0 - - Silicon transporter, putative [Ricinus communis]
2 Hb_003050_330 0.0774642322 - - hypothetical protein JCGZ_04591 [Jatropha curcas]
3 Hb_007666_010 0.0891786142 - - PREDICTED: uncharacterized protein LOC105649266 [Jatropha curcas]
4 Hb_032202_010 0.1014151283 - - PREDICTED: subtilisin-like protease SBT1.1 [Jatropha curcas]
5 Hb_002193_080 0.1119308823 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
6 Hb_003008_020 0.1122445518 - - auxin-responsive family protein [Populus trichocarpa]
7 Hb_008689_010 0.1127268903 - - hypothetical protein POPTR_0006s25330g [Populus trichocarpa]
8 Hb_002785_010 0.1181938911 transcription factor TF Family: MYB PREDICTED: transcription factor DIVARICATA-like [Jatropha curcas]
9 Hb_000120_480 0.1195318488 - - -
10 Hb_001158_250 0.1239037891 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001242_040 0.1240568309 - - PREDICTED: myb-related transcription factor, partner of profilin-like [Populus euphratica]
12 Hb_000347_320 0.1252350981 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
13 Hb_000369_040 0.1259819492 - - Ankyrin repeat family protein, putative [Theobroma cacao]
14 Hb_000271_130 0.1290869439 transcription factor TF Family: C2C2-Dof DNA binding with one finger 2.4, putative [Theobroma cacao]
15 Hb_000061_440 0.1328386696 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
16 Hb_173387_010 0.1333631103 - - hypothetical protein POPTR_0017s13190g, partial [Populus trichocarpa]
17 Hb_010222_060 0.1337127486 - - PREDICTED: acyltransferase-like protein At1g54570, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_005288_100 0.1347669616 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
19 Hb_005790_010 0.1350969811 - - hypothetical protein POPTR_0004s24080g [Populus trichocarpa]
20 Hb_000395_230 0.1359770756 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Vitis vinifera]

Gene co-expression network

sample Hb_003494_150 Hb_003494_150 Hb_003050_330 Hb_003050_330 Hb_003494_150--Hb_003050_330 Hb_007666_010 Hb_007666_010 Hb_003494_150--Hb_007666_010 Hb_032202_010 Hb_032202_010 Hb_003494_150--Hb_032202_010 Hb_002193_080 Hb_002193_080 Hb_003494_150--Hb_002193_080 Hb_003008_020 Hb_003008_020 Hb_003494_150--Hb_003008_020 Hb_008689_010 Hb_008689_010 Hb_003494_150--Hb_008689_010 Hb_003050_330--Hb_003008_020 Hb_003050_330--Hb_032202_010 Hb_003050_330--Hb_008689_010 Hb_003050_330--Hb_002193_080 Hb_003050_330--Hb_007666_010 Hb_007666_010--Hb_032202_010 Hb_000752_040 Hb_000752_040 Hb_007666_010--Hb_000752_040 Hb_000347_320 Hb_000347_320 Hb_007666_010--Hb_000347_320 Hb_000369_040 Hb_000369_040 Hb_007666_010--Hb_000369_040 Hb_032202_010--Hb_000752_040 Hb_002785_010 Hb_002785_010 Hb_032202_010--Hb_002785_010 Hb_032202_010--Hb_000369_040 Hb_002193_080--Hb_008689_010 Hb_005211_210 Hb_005211_210 Hb_002193_080--Hb_005211_210 Hb_002193_080--Hb_003008_020 Hb_000201_010 Hb_000201_010 Hb_002193_080--Hb_000201_010 Hb_005675_070 Hb_005675_070 Hb_002193_080--Hb_005675_070 Hb_003008_020--Hb_008689_010 Hb_036790_110 Hb_036790_110 Hb_003008_020--Hb_036790_110 Hb_077774_010 Hb_077774_010 Hb_003008_020--Hb_077774_010 Hb_003008_020--Hb_000752_040 Hb_008689_010--Hb_005211_210 Hb_008689_010--Hb_005675_070 Hb_001902_040 Hb_001902_040 Hb_008689_010--Hb_001902_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.74906 1.75655 3.67501 0.0206452 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.047098 0.0740888 0 0.0892607 6.16358

CAGE analysis