Hb_003494_170

Information

Type -
Description -
Location Contig3494: 169499-171691
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003494_170 0.0 - - -
2 Hb_000017_010 0.000363695 - - -
3 Hb_002028_080 0.0007639681 - - hypothetical protein JCGZ_07571 [Jatropha curcas]
4 Hb_077421_010 0.0009801416 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
5 Hb_004994_060 0.0025650354 - - PREDICTED: BON1-associated protein 2-like [Jatropha curcas]
6 Hb_011269_050 0.0028705964 - - -
7 Hb_001827_020 0.0036503659 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
8 Hb_001768_030 0.0075957027 - - -
9 Hb_000922_230 0.009366508 - - -
10 Hb_004724_110 0.0127262828 - - alpha-1,2-fucosyltransferase [Populus tremula x Populus alba]
11 Hb_000270_570 0.0137213017 - - PREDICTED: peroxidase 65-like [Jatropha curcas]
12 Hb_004642_010 0.0162654622 - - Integrase core domain, putative [Oryza sativa Japonica Group]
13 Hb_138358_010 0.016627469 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
14 Hb_003147_030 0.0168606735 transcription factor TF Family: Jumonji transcription factor, putative [Ricinus communis]
15 Hb_007945_040 0.0333974563 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
16 Hb_006642_010 0.0862800682 - - -
17 Hb_027846_010 0.1325791045 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
18 Hb_184484_010 0.1416113277 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_111985_020 0.1417361124 - - -
20 Hb_002659_100 0.1432307251 - - hypothetical protein OsI_37193 [Oryza sativa Indica Group]

Gene co-expression network

sample Hb_003494_170 Hb_003494_170 Hb_000017_010 Hb_000017_010 Hb_003494_170--Hb_000017_010 Hb_002028_080 Hb_002028_080 Hb_003494_170--Hb_002028_080 Hb_077421_010 Hb_077421_010 Hb_003494_170--Hb_077421_010 Hb_004994_060 Hb_004994_060 Hb_003494_170--Hb_004994_060 Hb_011269_050 Hb_011269_050 Hb_003494_170--Hb_011269_050 Hb_001827_020 Hb_001827_020 Hb_003494_170--Hb_001827_020 Hb_000017_010--Hb_002028_080 Hb_000017_010--Hb_077421_010 Hb_000017_010--Hb_011269_050 Hb_000017_010--Hb_004994_060 Hb_000017_010--Hb_001827_020 Hb_002028_080--Hb_077421_010 Hb_002028_080--Hb_011269_050 Hb_002028_080--Hb_001827_020 Hb_002028_080--Hb_004994_060 Hb_077421_010--Hb_011269_050 Hb_077421_010--Hb_001827_020 Hb_077421_010--Hb_004994_060 Hb_004994_060--Hb_011269_050 Hb_004994_060--Hb_001827_020 Hb_011269_050--Hb_001827_020 Hb_001768_030 Hb_001768_030 Hb_011269_050--Hb_001768_030 Hb_001827_020--Hb_001768_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0185679 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0143041 0

CAGE analysis