Hb_003494_180

Information

Type -
Description -
Location Contig3494: 184097-189388
Sequence    

Annotation

kegg
ID tcc:TCM_018560
description Amino acid transporter isoform 1
nr
ID XP_012084707.1
description PREDICTED: vacuolar amino acid transporter 1-like [Jatropha curcas]
swissprot
ID P47082
description Vacuolar amino acid transporter 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AVT1 PE=1 SV=1
trembl
ID A0A067JTC1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19851 PE=4 SV=1
Gene Ontology
ID GO:0005774
description vacuolar amino acid transporter 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36358: 188734-188909 , PASA_asmbl_36359: 187803-189620
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003494_180 0.0 - - PREDICTED: vacuolar amino acid transporter 1-like [Jatropha curcas]
2 Hb_002845_020 0.0764049718 - - hypothetical protein POPTR_0012s14920g [Populus trichocarpa]
3 Hb_016637_020 0.087612122 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
4 Hb_007205_020 0.0957708111 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
5 Hb_001866_100 0.1098594013 - - PREDICTED: uncharacterized protein LOC104212668 [Nicotiana sylvestris]
6 Hb_057321_010 0.1176143082 - - receptor serine/threonine kinase, putative [Ricinus communis]
7 Hb_001856_110 0.1178089103 - - PREDICTED: cellulose synthase-like protein G2 [Populus euphratica]
8 Hb_064106_010 0.118597954 - - PREDICTED: uncharacterized protein LOC104878249 [Vitis vinifera]
9 Hb_000261_370 0.1273393116 - - -
10 Hb_127661_010 0.1323234492 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_000191_100 0.1354760516 - - cytochrome P450, putative [Ricinus communis]
12 Hb_000049_170 0.1395381584 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000375_250 0.1421707551 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
14 Hb_000009_390 0.1427073357 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 2 isoform X2 [Jatropha curcas]
15 Hb_001301_010 0.1434384416 - - receptor protein kinase, putative [Ricinus communis]
16 Hb_031862_200 0.146665323 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]
17 Hb_003683_200 0.1479514448 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
18 Hb_031201_010 0.1489419365 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
19 Hb_029866_110 0.1513150814 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter C family member 10-like [Jatropha curcas]
20 Hb_170878_050 0.1531577287 - - retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]

Gene co-expression network

sample Hb_003494_180 Hb_003494_180 Hb_002845_020 Hb_002845_020 Hb_003494_180--Hb_002845_020 Hb_016637_020 Hb_016637_020 Hb_003494_180--Hb_016637_020 Hb_007205_020 Hb_007205_020 Hb_003494_180--Hb_007205_020 Hb_001866_100 Hb_001866_100 Hb_003494_180--Hb_001866_100 Hb_057321_010 Hb_057321_010 Hb_003494_180--Hb_057321_010 Hb_001856_110 Hb_001856_110 Hb_003494_180--Hb_001856_110 Hb_002845_020--Hb_001866_100 Hb_002845_020--Hb_007205_020 Hb_000049_170 Hb_000049_170 Hb_002845_020--Hb_000049_170 Hb_001301_010 Hb_001301_010 Hb_002845_020--Hb_001301_010 Hb_002845_020--Hb_016637_020 Hb_127661_010 Hb_127661_010 Hb_016637_020--Hb_127661_010 Hb_000191_100 Hb_000191_100 Hb_016637_020--Hb_000191_100 Hb_016637_020--Hb_007205_020 Hb_170878_050 Hb_170878_050 Hb_016637_020--Hb_170878_050 Hb_029866_110 Hb_029866_110 Hb_016637_020--Hb_029866_110 Hb_031201_010 Hb_031201_010 Hb_007205_020--Hb_031201_010 Hb_007205_020--Hb_001866_100 Hb_005496_170 Hb_005496_170 Hb_007205_020--Hb_005496_170 Hb_007035_010 Hb_007035_010 Hb_001866_100--Hb_007035_010 Hb_000009_390 Hb_000009_390 Hb_001866_100--Hb_000009_390 Hb_006588_020 Hb_006588_020 Hb_001866_100--Hb_006588_020 Hb_031862_200 Hb_031862_200 Hb_001866_100--Hb_031862_200 Hb_000417_250 Hb_000417_250 Hb_057321_010--Hb_000417_250 Hb_000116_330 Hb_000116_330 Hb_057321_010--Hb_000116_330 Hb_057321_010--Hb_001856_110 Hb_003683_200 Hb_003683_200 Hb_057321_010--Hb_003683_200 Hb_000261_370 Hb_000261_370 Hb_057321_010--Hb_000261_370 Hb_001856_110--Hb_000009_390 Hb_071130_020 Hb_071130_020 Hb_001856_110--Hb_071130_020 Hb_001856_110--Hb_003683_200 Hb_031949_010 Hb_031949_010 Hb_001856_110--Hb_031949_010 Hb_000680_020 Hb_000680_020 Hb_001856_110--Hb_000680_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.98058 2.87888 0.623286 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.031229 0 0 4.18752 5.85949

CAGE analysis