Hb_003494_240

Information

Type -
Description -
Location Contig3494: 232017-236918
Sequence    

Annotation

kegg
ID rcu:RCOM_0340260
description hypothetical protein
nr
ID XP_012084712.1
description PREDICTED: uncharacterized protein LOC105644075 [Jatropha curcas]
swissprot
ID Q9VUQ8
description DCN1-like protein OS=Drosophila melanogaster GN=CG7427 PE=2 SV=2
trembl
ID A0A067JTC5
description Defective in cullin neddylation protein OS=Jatropha curcas GN=JCGZ_19856 PE=4 SV=1
Gene Ontology
ID GO:0005634
description PREDICTED: uncharacterized protein LOC105644075

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36364: 232028-236892
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003494_240 0.0 - - PREDICTED: uncharacterized protein LOC105644075 [Jatropha curcas]
2 Hb_001454_060 0.0727902941 - - uncharacterized protein LOC100527252 [Glycine max]
3 Hb_000608_120 0.0740032121 - - PREDICTED: uncharacterized protein LOC105644872 [Jatropha curcas]
4 Hb_000703_090 0.0747263788 - - PREDICTED: 14-3-3-like protein D [Cucumis sativus]
5 Hb_002215_050 0.0797569079 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
6 Hb_030312_040 0.0826135474 - - hypothetical protein JCGZ_04876 [Jatropha curcas]
7 Hb_003638_140 0.0861344072 - - protein binding protein, putative [Ricinus communis]
8 Hb_024714_030 0.0862102421 - - PREDICTED: sm-like protein LSM4 [Jatropha curcas]
9 Hb_002014_080 0.0918963599 - - PREDICTED: tankyrase-1 isoform X4 [Jatropha curcas]
10 Hb_006452_030 0.0963493445 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
11 Hb_001047_020 0.0967455877 - - -
12 Hb_000703_080 0.0973461514 - - guanine nucleotide exchange factor P532, putative [Ricinus communis]
13 Hb_000172_400 0.0997630871 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
14 Hb_002686_270 0.1000168097 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001369_060 0.1004646979 - - PREDICTED: uncharacterized Rho GTPase-activating protein At5g61530 [Jatropha curcas]
16 Hb_000027_270 0.1024541633 - - PREDICTED: zinc finger protein 6 [Jatropha curcas]
17 Hb_005324_010 0.1037823487 - - Chaperone protein dnaJ, putative [Ricinus communis]
18 Hb_003581_140 0.1041642918 - - PREDICTED: hypersensitive-induced response protein 1-like [Nelumbo nucifera]
19 Hb_000078_130 0.1043061327 - - -
20 Hb_000671_100 0.1043155846 - - hypothetical protein POPTR_0017s06410g [Populus trichocarpa]

Gene co-expression network

sample Hb_003494_240 Hb_003494_240 Hb_001454_060 Hb_001454_060 Hb_003494_240--Hb_001454_060 Hb_000608_120 Hb_000608_120 Hb_003494_240--Hb_000608_120 Hb_000703_090 Hb_000703_090 Hb_003494_240--Hb_000703_090 Hb_002215_050 Hb_002215_050 Hb_003494_240--Hb_002215_050 Hb_030312_040 Hb_030312_040 Hb_003494_240--Hb_030312_040 Hb_003638_140 Hb_003638_140 Hb_003494_240--Hb_003638_140 Hb_001454_060--Hb_000608_120 Hb_000078_130 Hb_000078_130 Hb_001454_060--Hb_000078_130 Hb_000703_080 Hb_000703_080 Hb_001454_060--Hb_000703_080 Hb_000172_400 Hb_000172_400 Hb_001454_060--Hb_000172_400 Hb_001817_180 Hb_001817_180 Hb_001454_060--Hb_001817_180 Hb_003581_140 Hb_003581_140 Hb_000608_120--Hb_003581_140 Hb_000608_120--Hb_002215_050 Hb_000608_120--Hb_003638_140 Hb_000608_120--Hb_000703_080 Hb_000703_090--Hb_002215_050 Hb_015941_030 Hb_015941_030 Hb_000703_090--Hb_015941_030 Hb_001124_210 Hb_001124_210 Hb_000703_090--Hb_001124_210 Hb_024714_030 Hb_024714_030 Hb_000703_090--Hb_024714_030 Hb_000386_040 Hb_000386_040 Hb_000703_090--Hb_000386_040 Hb_001369_060 Hb_001369_060 Hb_002215_050--Hb_001369_060 Hb_002215_050--Hb_003638_140 Hb_033491_010 Hb_033491_010 Hb_002215_050--Hb_033491_010 Hb_000784_090 Hb_000784_090 Hb_002215_050--Hb_000784_090 Hb_001214_130 Hb_001214_130 Hb_002215_050--Hb_001214_130 Hb_002215_050--Hb_024714_030 Hb_006452_030 Hb_006452_030 Hb_030312_040--Hb_006452_030 Hb_030312_040--Hb_000703_080 Hb_002263_010 Hb_002263_010 Hb_030312_040--Hb_002263_010 Hb_030312_040--Hb_000608_120 Hb_008725_250 Hb_008725_250 Hb_030312_040--Hb_008725_250 Hb_003638_140--Hb_001369_060 Hb_003638_140--Hb_024714_030 Hb_011496_010 Hb_011496_010 Hb_003638_140--Hb_011496_010 Hb_001804_060 Hb_001804_060 Hb_003638_140--Hb_001804_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
216.951 105.906 17.4675 60.9125 196.404 357.213
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
203.096 118.078 192.738 69.0626 17.8996

CAGE analysis