Hb_003497_020

Information

Type transcription factor
Description TF Family: MYB
Location Contig3497: 26231-28002
Sequence    

Annotation

kegg
ID pop:POPTR_0017s02850g
description myb family transcription factor family protein
nr
ID BAR45578.1
description MYB transcriptional factor [Populus nigra]
swissprot
ID Q50EX6
description Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 SV=1
trembl
ID U5FLU9
description Myb family transcription factor family protein OS=Populus trichocarpa GN=POPTR_0017s02850g PE=4 SV=1
Gene Ontology
ID GO:0005488
description protein odorant1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003497_020 0.0 transcription factor TF Family: MYB MYB transcriptional factor [Populus nigra]
2 Hb_006002_010 0.1298640321 transcription factor TF Family: MYB Myb domain protein 5 isoform 1 [Theobroma cacao]
3 Hb_008226_120 0.1357730145 - - ATP binding protein, putative [Ricinus communis]
4 Hb_004544_090 0.1388310436 - - cytochrome P450, putative [Ricinus communis]
5 Hb_001894_040 0.151198701 - - PREDICTED: carbonic anhydrase 2 isoform X1 [Jatropha curcas]
6 Hb_000037_010 0.1563155715 - - PREDICTED: cation/H(+) antiporter 18-like [Jatropha curcas]
7 Hb_000417_280 0.1571555663 - - conserved hypothetical protein [Ricinus communis]
8 Hb_038777_010 0.1580189842 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN2 isoform X1 [Populus euphratica]
9 Hb_000163_250 0.1583878952 - - unnamed protein product [Vitis vinifera]
10 Hb_046101_010 0.1623956462 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3 [Jatropha curcas]
11 Hb_001636_010 0.1633603622 - - hypothetical protein JCGZ_01264 [Jatropha curcas]
12 Hb_020285_010 0.1665490315 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3, partial [Pyrus x bretschneideri]
13 Hb_027556_040 0.1686199063 - - PREDICTED: pleiotropic drug resistance protein 1-like [Vitis vinifera]
14 Hb_002078_240 0.1700641733 rubber biosynthesis Gene Name: SRPP4 PREDICTED: REF/SRPP-like protein At1g67360 [Jatropha curcas]
15 Hb_002276_100 0.1715200241 - - PREDICTED: UDP-glycosyltransferase 89A2-like [Jatropha curcas]
16 Hb_075449_040 0.1718903102 - - PREDICTED: meiotic recombination protein SPO11-1 [Jatropha curcas]
17 Hb_006241_010 0.172839409 desease resistance Gene Name: NB-ARC Disease resistance protein RFL1, putative [Ricinus communis]
18 Hb_001421_010 0.1745627361 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator-like APRR2 isoform X1 [Jatropha curcas]
19 Hb_008406_020 0.1753770052 - - PREDICTED: probable aminotransferase TAT2 [Jatropha curcas]
20 Hb_000424_100 0.1762775812 desease resistance Gene Name: G-alpha GTP-binding protein (p) alpha subunit, gpa1, putative [Ricinus communis]

Gene co-expression network

sample Hb_003497_020 Hb_003497_020 Hb_006002_010 Hb_006002_010 Hb_003497_020--Hb_006002_010 Hb_008226_120 Hb_008226_120 Hb_003497_020--Hb_008226_120 Hb_004544_090 Hb_004544_090 Hb_003497_020--Hb_004544_090 Hb_001894_040 Hb_001894_040 Hb_003497_020--Hb_001894_040 Hb_000037_010 Hb_000037_010 Hb_003497_020--Hb_000037_010 Hb_000417_280 Hb_000417_280 Hb_003497_020--Hb_000417_280 Hb_006002_010--Hb_004544_090 Hb_002078_250 Hb_002078_250 Hb_006002_010--Hb_002078_250 Hb_017604_020 Hb_017604_020 Hb_006002_010--Hb_017604_020 Hb_002324_050 Hb_002324_050 Hb_006002_010--Hb_002324_050 Hb_000069_430 Hb_000069_430 Hb_006002_010--Hb_000069_430 Hb_008226_120--Hb_001894_040 Hb_038777_010 Hb_038777_010 Hb_008226_120--Hb_038777_010 Hb_001862_060 Hb_001862_060 Hb_008226_120--Hb_001862_060 Hb_008406_020 Hb_008406_020 Hb_008226_120--Hb_008406_020 Hb_009581_040 Hb_009581_040 Hb_008226_120--Hb_009581_040 Hb_012807_060 Hb_012807_060 Hb_008226_120--Hb_012807_060 Hb_001123_170 Hb_001123_170 Hb_004544_090--Hb_001123_170 Hb_000411_050 Hb_000411_050 Hb_004544_090--Hb_000411_050 Hb_002276_100 Hb_002276_100 Hb_004544_090--Hb_002276_100 Hb_020285_010 Hb_020285_010 Hb_004544_090--Hb_020285_010 Hb_007894_030 Hb_007894_030 Hb_004544_090--Hb_007894_030 Hb_000085_230 Hb_000085_230 Hb_001894_040--Hb_000085_230 Hb_000579_180 Hb_000579_180 Hb_001894_040--Hb_000579_180 Hb_046101_010 Hb_046101_010 Hb_001894_040--Hb_046101_010 Hb_001894_040--Hb_001862_060 Hb_001636_010 Hb_001636_010 Hb_001894_040--Hb_001636_010 Hb_001085_230 Hb_001085_230 Hb_000037_010--Hb_001085_230 Hb_009803_030 Hb_009803_030 Hb_000037_010--Hb_009803_030 Hb_000163_250 Hb_000163_250 Hb_000037_010--Hb_000163_250 Hb_000037_010--Hb_046101_010 Hb_114310_050 Hb_114310_050 Hb_000037_010--Hb_114310_050 Hb_023344_130 Hb_023344_130 Hb_000037_010--Hb_023344_130 Hb_001008_110 Hb_001008_110 Hb_000417_280--Hb_001008_110 Hb_002833_020 Hb_002833_020 Hb_000417_280--Hb_002833_020 Hb_032717_010 Hb_032717_010 Hb_000417_280--Hb_032717_010 Hb_009193_060 Hb_009193_060 Hb_000417_280--Hb_009193_060 Hb_001268_300 Hb_001268_300 Hb_000417_280--Hb_001268_300 Hb_000739_160 Hb_000739_160 Hb_000417_280--Hb_000739_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.674422 0.278861 0.381698 0.0952537 0.039867
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.690267 0.225565

CAGE analysis