Hb_003497_030

Information

Type -
Description -
Location Contig3497: 40272-44393
Sequence    

Annotation

kegg
ID rcu:RCOM_0060350
description ADP-ribosylation factor, putative
nr
ID XP_002531018.1
description ADP-ribosylation factor, putative [Ricinus communis]
swissprot
ID Q6NZW8
description ADP-ribosylation factor-like protein 8B-A OS=Danio rerio GN=arl8ba PE=2 SV=1
trembl
ID B9SYE9
description ADP-ribosylation factor, putative OS=Ricinus communis GN=RCOM_0060350 PE=4 SV=1
Gene Ontology
ID GO:0005622
description adp-ribosylation factor-like protein 8b isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36366: 40090-41083 , PASA_asmbl_36368: 40090-44383 , PASA_asmbl_36369: 43703-44383
cDNA
(Sanger)
(ID:Location)		 009_F07.ab1: 40094-40806 , 010_C17.ab1: 40090-43825 , 011_M17.ab1: 40096-40863 , 031_B17.ab1: 40090-43817

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003497_030 0.0 - - ADP-ribosylation factor, putative [Ricinus communis]
2 Hb_000380_180 0.0867767844 - - kinase, putative [Ricinus communis]
3 Hb_001606_070 0.0994746169 - - fimbrin, putative [Ricinus communis]
4 Hb_002357_040 0.1023094378 - - latex-abundant protein [Hevea brasiliensis]
5 Hb_027751_020 0.1047771464 - - PREDICTED: uncharacterized protein LOC104886652 [Beta vulgaris subsp. vulgaris]
6 Hb_000260_060 0.1069374817 - - PREDICTED: mannan endo-1,4-beta-mannosidase 6 [Jatropha curcas]
7 Hb_002835_170 0.1101757434 - - PREDICTED: uncharacterized protein LOC105640307 [Jatropha curcas]
8 Hb_000249_130 0.1107999495 - - hypothetical protein RCOM_0254640 [Ricinus communis]
9 Hb_000025_480 0.1144874423 transcription factor TF Family: HB PREDICTED: homeobox protein 10 isoform X1 [Jatropha curcas]
10 Hb_001488_100 0.1147163461 - - -
11 Hb_001767_010 0.1174779675 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
12 Hb_005779_100 0.1198596424 - - DNAJ [Theobroma cacao]
13 Hb_003030_080 0.1201739731 - - multidrug resistance pump, putative [Ricinus communis]
14 Hb_000427_030 0.1204635595 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002301_320 0.1219502109 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0004s04590g [Populus trichocarpa]
16 Hb_001396_230 0.1221984166 - - hypothetical protein MIMGU_mgv1a023992mg, partial [Erythranthe guttata]
17 Hb_000387_080 0.1231493933 - - PREDICTED: protein IQ-DOMAIN 1 isoform X2 [Jatropha curcas]
18 Hb_004800_160 0.1237541865 - - Uncharacterized protein TCM_000403 [Theobroma cacao]
19 Hb_001999_060 0.124926591 - - hypothetical protein POPTR_0009s05000g [Populus trichocarpa]
20 Hb_000427_110 0.1255113798 - - PREDICTED: DNA repair protein XRCC2 homolog isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_003497_030 Hb_003497_030 Hb_000380_180 Hb_000380_180 Hb_003497_030--Hb_000380_180 Hb_001606_070 Hb_001606_070 Hb_003497_030--Hb_001606_070 Hb_002357_040 Hb_002357_040 Hb_003497_030--Hb_002357_040 Hb_027751_020 Hb_027751_020 Hb_003497_030--Hb_027751_020 Hb_000260_060 Hb_000260_060 Hb_003497_030--Hb_000260_060 Hb_002835_170 Hb_002835_170 Hb_003497_030--Hb_002835_170 Hb_001767_010 Hb_001767_010 Hb_000380_180--Hb_001767_010 Hb_000427_030 Hb_000427_030 Hb_000380_180--Hb_000427_030 Hb_000380_180--Hb_000260_060 Hb_002739_110 Hb_002739_110 Hb_000380_180--Hb_002739_110 Hb_000249_130 Hb_000249_130 Hb_000380_180--Hb_000249_130 Hb_000849_040 Hb_000849_040 Hb_001606_070--Hb_000849_040 Hb_005779_100 Hb_005779_100 Hb_001606_070--Hb_005779_100 Hb_003030_080 Hb_003030_080 Hb_001606_070--Hb_003030_080 Hb_000427_110 Hb_000427_110 Hb_001606_070--Hb_000427_110 Hb_006787_040 Hb_006787_040 Hb_001606_070--Hb_006787_040 Hb_000861_040 Hb_000861_040 Hb_001606_070--Hb_000861_040 Hb_000025_480 Hb_000025_480 Hb_002357_040--Hb_000025_480 Hb_001981_090 Hb_001981_090 Hb_002357_040--Hb_001981_090 Hb_001366_220 Hb_001366_220 Hb_002357_040--Hb_001366_220 Hb_000805_090 Hb_000805_090 Hb_002357_040--Hb_000805_090 Hb_000696_110 Hb_000696_110 Hb_002357_040--Hb_000696_110 Hb_000387_080 Hb_000387_080 Hb_002357_040--Hb_000387_080 Hb_000249_110 Hb_000249_110 Hb_027751_020--Hb_000249_110 Hb_000571_070 Hb_000571_070 Hb_027751_020--Hb_000571_070 Hb_002609_260 Hb_002609_260 Hb_027751_020--Hb_002609_260 Hb_010931_100 Hb_010931_100 Hb_027751_020--Hb_010931_100 Hb_000563_540 Hb_000563_540 Hb_027751_020--Hb_000563_540 Hb_000264_190 Hb_000264_190 Hb_027751_020--Hb_000264_190 Hb_001677_110 Hb_001677_110 Hb_000260_060--Hb_001677_110 Hb_024952_010 Hb_024952_010 Hb_000260_060--Hb_024952_010 Hb_010174_120 Hb_010174_120 Hb_000260_060--Hb_010174_120 Hb_002498_100 Hb_002498_100 Hb_000260_060--Hb_002498_100 Hb_011457_100 Hb_011457_100 Hb_002835_170--Hb_011457_100 Hb_001478_050 Hb_001478_050 Hb_002835_170--Hb_001478_050 Hb_001102_010 Hb_001102_010 Hb_002835_170--Hb_001102_010 Hb_002301_320 Hb_002301_320 Hb_002835_170--Hb_002301_320 Hb_116349_150 Hb_116349_150 Hb_002835_170--Hb_116349_150 Hb_002835_170--Hb_001606_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
108.74 4.6133 1.17161 17.168 86.6615 118.527
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
84.4673 90.205 187.078 24.6624 2.95989

CAGE analysis