Hb_003497_040

Information

Type -
Description -
Location Contig3497: 50689-54355
Sequence    

Annotation

kegg
ID rcu:RCOM_0060310
description ATP binding protein, putative (EC:1.3.1.74 2.7.11.26)
nr
ID XP_002531014.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q9LP77
description Probable inactive receptor kinase At1g48480 OS=Arabidopsis thaliana GN=RKL1 PE=2 SV=1
trembl
ID B9SYE5
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_0060310 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable inactive receptor kinase at1g48480

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36371: 50676-54184
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003497_040 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_028697_010 0.1365424939 - - PREDICTED: protein yippee-like At4g27745 [Jatropha curcas]
3 Hb_032208_070 0.1402016078 - - PREDICTED: probable polyamine transporter At3g13620 isoform X2 [Jatropha curcas]
4 Hb_001454_260 0.1477439205 - - hypothetical protein RCOM_0681280 [Ricinus communis]
5 Hb_148025_010 0.1486139745 - - PREDICTED: disease resistance protein RPS6-like isoform X2 [Jatropha curcas]
6 Hb_000997_250 0.1487496964 - - PREDICTED: probable alpha-mannosidase I MNS4 [Jatropha curcas]
7 Hb_011360_070 0.1491335517 - - PREDICTED: zinc finger RNA-binding protein [Jatropha curcas]
8 Hb_026314_020 0.151923305 - - hypothetical protein POPTR_0019s10050g [Populus trichocarpa]
9 Hb_000983_040 0.1529559541 - - PREDICTED: transmembrane protein 136 [Jatropha curcas]
10 Hb_000030_180 0.153412476 - - PREDICTED: uncharacterized protein LOC105632645 isoform X1 [Jatropha curcas]
11 Hb_007760_040 0.156295189 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105630457 [Jatropha curcas]
12 Hb_032808_020 0.1591750672 - - PREDICTED: hypersensitive-induced response protein 2 [Nicotiana tomentosiformis]
13 Hb_001252_130 0.161044769 - - PREDICTED: protein YIPF1 homolog [Jatropha curcas]
14 Hb_000261_020 0.1610581903 - - PREDICTED: chaperone protein dnaJ 20, chloroplastic [Jatropha curcas]
15 Hb_003607_050 0.1615280371 - - PREDICTED: uncharacterized protein LOC105644428 [Jatropha curcas]
16 Hb_001513_010 0.1617913447 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004052_040 0.1620769946 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
18 Hb_010222_020 0.162391613 - - PREDICTED: uncharacterized protein LOC105647642 [Jatropha curcas]
19 Hb_006502_060 0.1632005746 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001100_060 0.1645589524 - - glycoprotein 3-alpha-l-fucosyltransferase A, putative [Ricinus communis]

Gene co-expression network

sample Hb_003497_040 Hb_003497_040 Hb_028697_010 Hb_028697_010 Hb_003497_040--Hb_028697_010 Hb_032208_070 Hb_032208_070 Hb_003497_040--Hb_032208_070 Hb_001454_260 Hb_001454_260 Hb_003497_040--Hb_001454_260 Hb_148025_010 Hb_148025_010 Hb_003497_040--Hb_148025_010 Hb_000997_250 Hb_000997_250 Hb_003497_040--Hb_000997_250 Hb_011360_070 Hb_011360_070 Hb_003497_040--Hb_011360_070 Hb_001252_130 Hb_001252_130 Hb_028697_010--Hb_001252_130 Hb_000261_020 Hb_000261_020 Hb_028697_010--Hb_000261_020 Hb_005496_140 Hb_005496_140 Hb_028697_010--Hb_005496_140 Hb_001902_030 Hb_001902_030 Hb_028697_010--Hb_001902_030 Hb_000375_350 Hb_000375_350 Hb_028697_010--Hb_000375_350 Hb_002235_250 Hb_002235_250 Hb_028697_010--Hb_002235_250 Hb_032808_020 Hb_032808_020 Hb_032208_070--Hb_032808_020 Hb_032208_070--Hb_000261_020 Hb_000053_110 Hb_000053_110 Hb_032208_070--Hb_000053_110 Hb_007760_040 Hb_007760_040 Hb_032208_070--Hb_007760_040 Hb_003749_010 Hb_003749_010 Hb_032208_070--Hb_003749_010 Hb_004195_270 Hb_004195_270 Hb_032208_070--Hb_004195_270 Hb_000795_060 Hb_000795_060 Hb_001454_260--Hb_000795_060 Hb_003581_100 Hb_003581_100 Hb_001454_260--Hb_003581_100 Hb_033153_090 Hb_033153_090 Hb_001454_260--Hb_033153_090 Hb_001421_060 Hb_001421_060 Hb_001454_260--Hb_001421_060 Hb_011781_030 Hb_011781_030 Hb_001454_260--Hb_011781_030 Hb_005400_030 Hb_005400_030 Hb_001454_260--Hb_005400_030 Hb_000120_730 Hb_000120_730 Hb_148025_010--Hb_000120_730 Hb_033594_120 Hb_033594_120 Hb_148025_010--Hb_033594_120 Hb_002835_080 Hb_002835_080 Hb_148025_010--Hb_002835_080 Hb_002477_330 Hb_002477_330 Hb_148025_010--Hb_002477_330 Hb_000009_080 Hb_000009_080 Hb_148025_010--Hb_000009_080 Hb_000671_050 Hb_000671_050 Hb_148025_010--Hb_000671_050 Hb_002995_050 Hb_002995_050 Hb_000997_250--Hb_002995_050 Hb_002171_060 Hb_002171_060 Hb_000997_250--Hb_002171_060 Hb_000419_020 Hb_000419_020 Hb_000997_250--Hb_000419_020 Hb_006846_130 Hb_006846_130 Hb_000997_250--Hb_006846_130 Hb_014720_040 Hb_014720_040 Hb_000997_250--Hb_014720_040 Hb_000005_090 Hb_000005_090 Hb_000997_250--Hb_000005_090 Hb_000421_220 Hb_000421_220 Hb_011360_070--Hb_000421_220 Hb_002183_060 Hb_002183_060 Hb_011360_070--Hb_002183_060 Hb_003605_090 Hb_003605_090 Hb_011360_070--Hb_003605_090 Hb_003697_040 Hb_003697_040 Hb_011360_070--Hb_003697_040 Hb_008453_030 Hb_008453_030 Hb_011360_070--Hb_008453_030 Hb_004127_020 Hb_004127_020 Hb_011360_070--Hb_004127_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.2581 4.87327 6.4077 13.8344 4.15139 11.4286
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.2588 21.2307 7.22504 2.68831 15.2401

CAGE analysis