Hb_003498_080

Information

Type -
Description -
Location Contig3498: 142720-147989
Sequence    

Annotation

kegg
ID rcu:RCOM_0867840
description hypothetical protein
nr
ID XP_012072658.1
description PREDICTED: decapping 5-like protein isoform X2 [Jatropha curcas]
swissprot
ID Q9FH77
description Decapping 5-like protein OS=Arabidopsis thaliana GN=DCP5-L PE=2 SV=1
trembl
ID A0A067KZZ5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06717 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36372: 142751-145433 , PASA_asmbl_36373: 142809-143103 , PASA_asmbl_36374: 145456-145722
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003498_080 0.0 - - PREDICTED: decapping 5-like protein isoform X2 [Jatropha curcas]
2 Hb_001329_250 0.0517195621 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105642692 isoform X1 [Jatropha curcas]
3 Hb_000212_420 0.0598998846 - - PREDICTED: probable protein phosphatase 2C 33 [Jatropha curcas]
4 Hb_001776_020 0.0600112955 - - Protein kinase capable of phosphorylating tyrosine family protein [Populus trichocarpa]
5 Hb_001481_060 0.0626648202 - - PREDICTED: E3 ubiquitin-protein ligase HOS1 isoform X1 [Jatropha curcas]
6 Hb_003040_050 0.0643023601 - - PREDICTED: uncharacterized protein LOC105638219 [Jatropha curcas]
7 Hb_012114_100 0.0686501872 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
8 Hb_005214_140 0.0692645518 - - PREDICTED: transcription factor GTE2-like [Jatropha curcas]
9 Hb_000139_080 0.0693344103 - - PREDICTED: vacuole membrane protein KMS1 isoform X2 [Jatropha curcas]
10 Hb_001828_170 0.069939543 - - PREDICTED: protein TPLATE [Jatropha curcas]
11 Hb_004037_020 0.0700190833 - - PREDICTED: uncharacterized protein LOC105632366 isoform X1 [Jatropha curcas]
12 Hb_000345_160 0.070238515 - - PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Jatropha curcas]
13 Hb_011249_070 0.0719990355 - - hypothetical protein POPTR_0018s12610g [Populus trichocarpa]
14 Hb_003581_200 0.0730917263 - - PREDICTED: uncharacterized protein LOC105640179 [Jatropha curcas]
15 Hb_000773_040 0.0736251039 - - PREDICTED: uncharacterized protein LOC105641863 isoform X2 [Jatropha curcas]
16 Hb_000300_270 0.0737007857 - - cationic amino acid transporter, putative [Ricinus communis]
17 Hb_004030_080 0.0748156735 - - hypothetical protein JCGZ_25110 [Jatropha curcas]
18 Hb_002883_030 0.0748290548 - - PREDICTED: uncharacterized protein LOC105638222 [Jatropha curcas]
19 Hb_002890_130 0.0750297922 - - tip120, putative [Ricinus communis]
20 Hb_000270_190 0.0752312437 transcription factor TF Family: DDT tRNA ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003498_080 Hb_003498_080 Hb_001329_250 Hb_001329_250 Hb_003498_080--Hb_001329_250 Hb_000212_420 Hb_000212_420 Hb_003498_080--Hb_000212_420 Hb_001776_020 Hb_001776_020 Hb_003498_080--Hb_001776_020 Hb_001481_060 Hb_001481_060 Hb_003498_080--Hb_001481_060 Hb_003040_050 Hb_003040_050 Hb_003498_080--Hb_003040_050 Hb_012114_100 Hb_012114_100 Hb_003498_080--Hb_012114_100 Hb_001329_250--Hb_000212_420 Hb_005214_140 Hb_005214_140 Hb_001329_250--Hb_005214_140 Hb_004044_050 Hb_004044_050 Hb_001329_250--Hb_004044_050 Hb_001828_170 Hb_001828_170 Hb_001329_250--Hb_001828_170 Hb_000270_190 Hb_000270_190 Hb_001329_250--Hb_000270_190 Hb_010315_020 Hb_010315_020 Hb_000212_420--Hb_010315_020 Hb_008014_040 Hb_008014_040 Hb_000212_420--Hb_008014_040 Hb_000212_420--Hb_001776_020 Hb_010042_030 Hb_010042_030 Hb_000212_420--Hb_010042_030 Hb_001776_020--Hb_001481_060 Hb_004531_100 Hb_004531_100 Hb_001776_020--Hb_004531_100 Hb_000103_340 Hb_000103_340 Hb_001776_020--Hb_000103_340 Hb_001776_020--Hb_010315_020 Hb_001716_020 Hb_001716_020 Hb_001481_060--Hb_001716_020 Hb_007248_030 Hb_007248_030 Hb_001481_060--Hb_007248_030 Hb_002492_010 Hb_002492_010 Hb_001481_060--Hb_002492_010 Hb_000345_160 Hb_000345_160 Hb_001481_060--Hb_000345_160 Hb_033312_040 Hb_033312_040 Hb_001481_060--Hb_033312_040 Hb_004037_020 Hb_004037_020 Hb_001481_060--Hb_004037_020 Hb_009288_020 Hb_009288_020 Hb_003040_050--Hb_009288_020 Hb_073171_070 Hb_073171_070 Hb_003040_050--Hb_073171_070 Hb_006663_060 Hb_006663_060 Hb_003040_050--Hb_006663_060 Hb_000317_100 Hb_000317_100 Hb_003040_050--Hb_000317_100 Hb_011174_020 Hb_011174_020 Hb_003040_050--Hb_011174_020 Hb_001925_060 Hb_001925_060 Hb_003040_050--Hb_001925_060 Hb_012518_070 Hb_012518_070 Hb_012114_100--Hb_012518_070 Hb_006452_120 Hb_006452_120 Hb_012114_100--Hb_006452_120 Hb_001440_020 Hb_001440_020 Hb_012114_100--Hb_001440_020 Hb_011249_070 Hb_011249_070 Hb_012114_100--Hb_011249_070 Hb_012055_040 Hb_012055_040 Hb_012114_100--Hb_012055_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.92797 7.02041 5.69389 8.56346 3.24872 4.9946
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.49935 3.35786 4.84577 5.47464 7.5686

CAGE analysis