Hb_003498_090

Information

Type -
Description -
Location Contig3498: 160732-171266
Sequence    

Annotation

kegg
ID rcu:RCOM_0867850
description hypothetical protein
nr
ID XP_002519940.1
description hypothetical protein RCOM_0867850 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S1S5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0867850 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36375: 162066-162433 , PASA_asmbl_36376: 167434-168807 , PASA_asmbl_36377: 169883-170052 , PASA_asmbl_36378: 170936-171089
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003498_090 0.0 - - hypothetical protein RCOM_0867850 [Ricinus communis]
2 Hb_010997_080 0.091962625 transcription factor TF Family: mTERF unnamed protein product [Vitis vinifera]
3 Hb_008643_040 0.0999740799 - - PREDICTED: jacalin-related lectin 3-like [Jatropha curcas]
4 Hb_000125_130 0.1011842613 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC104879785 [Vitis vinifera]
5 Hb_010712_030 0.1012529027 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001430_120 0.1015781477 - - PREDICTED: DNA polymerase delta subunit 4 [Jatropha curcas]
7 Hb_000343_160 0.1021007795 - - PREDICTED: protein SYS1 homolog [Jatropha curcas]
8 Hb_005333_070 0.1028975915 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001864_060 0.1081079753 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
10 Hb_004310_020 0.1087735119 - - PREDICTED: COP9 signalosome complex subunit 7 isoform X1 [Jatropha curcas]
11 Hb_000060_040 0.1091726354 - - hypothetical protein JCGZ_21620 [Jatropha curcas]
12 Hb_000441_140 0.111146106 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X2 [Jatropha curcas]
13 Hb_000562_090 0.11126714 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 6 [Jatropha curcas]
14 Hb_005291_030 0.1113944748 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
15 Hb_001252_010 0.1130288806 - - hypothetical protein JCGZ_01389 [Jatropha curcas]
16 Hb_000953_020 0.1140844446 - - PREDICTED: serine/threonine-protein kinase CTR1 [Jatropha curcas]
17 Hb_000125_170 0.1142061516 transcription factor TF Family: mTERF hypothetical protein VITISV_028994 [Vitis vinifera]
18 Hb_000357_110 0.1142800406 - - PREDICTED: uncharacterized protein LOC105643970 isoform X2 [Jatropha curcas]
19 Hb_000000_270 0.1143808689 - - PREDICTED: E3 ubiquitin-protein ligase RNF185 [Jatropha curcas]
20 Hb_000032_620 0.1147258998 - - hypothetical protein RCOM_1311830 [Ricinus communis]

Gene co-expression network

sample Hb_003498_090 Hb_003498_090 Hb_010997_080 Hb_010997_080 Hb_003498_090--Hb_010997_080 Hb_008643_040 Hb_008643_040 Hb_003498_090--Hb_008643_040 Hb_000125_130 Hb_000125_130 Hb_003498_090--Hb_000125_130 Hb_010712_030 Hb_010712_030 Hb_003498_090--Hb_010712_030 Hb_001430_120 Hb_001430_120 Hb_003498_090--Hb_001430_120 Hb_000343_160 Hb_000343_160 Hb_003498_090--Hb_000343_160 Hb_002205_110 Hb_002205_110 Hb_010997_080--Hb_002205_110 Hb_000441_140 Hb_000441_140 Hb_010997_080--Hb_000441_140 Hb_000028_370 Hb_000028_370 Hb_010997_080--Hb_000028_370 Hb_000173_490 Hb_000173_490 Hb_010997_080--Hb_000173_490 Hb_003389_040 Hb_003389_040 Hb_010997_080--Hb_003389_040 Hb_005048_130 Hb_005048_130 Hb_010997_080--Hb_005048_130 Hb_008643_040--Hb_000125_130 Hb_000045_090 Hb_000045_090 Hb_008643_040--Hb_000045_090 Hb_000365_390 Hb_000365_390 Hb_008643_040--Hb_000365_390 Hb_004767_100 Hb_004767_100 Hb_008643_040--Hb_004767_100 Hb_007416_280 Hb_007416_280 Hb_008643_040--Hb_007416_280 Hb_000205_300 Hb_000205_300 Hb_008643_040--Hb_000205_300 Hb_007904_200 Hb_007904_200 Hb_000125_130--Hb_007904_200 Hb_000125_130--Hb_010712_030 Hb_000125_130--Hb_000365_390 Hb_010457_030 Hb_010457_030 Hb_000125_130--Hb_010457_030 Hb_002835_080 Hb_002835_080 Hb_000125_130--Hb_002835_080 Hb_004310_020 Hb_004310_020 Hb_010712_030--Hb_004310_020 Hb_000099_080 Hb_000099_080 Hb_010712_030--Hb_000099_080 Hb_000152_380 Hb_000152_380 Hb_010712_030--Hb_000152_380 Hb_001408_040 Hb_001408_040 Hb_010712_030--Hb_001408_040 Hb_007059_010 Hb_007059_010 Hb_010712_030--Hb_007059_010 Hb_142439_010 Hb_142439_010 Hb_001430_120--Hb_142439_010 Hb_001358_030 Hb_001358_030 Hb_001430_120--Hb_001358_030 Hb_000189_340 Hb_000189_340 Hb_001430_120--Hb_000189_340 Hb_005260_020 Hb_005260_020 Hb_001430_120--Hb_005260_020 Hb_002296_050 Hb_002296_050 Hb_001430_120--Hb_002296_050 Hb_004310_150 Hb_004310_150 Hb_001430_120--Hb_004310_150 Hb_005333_070 Hb_005333_070 Hb_000343_160--Hb_005333_070 Hb_000343_160--Hb_000125_130 Hb_007590_010 Hb_007590_010 Hb_000343_160--Hb_007590_010 Hb_000343_160--Hb_004767_100 Hb_000780_060 Hb_000780_060 Hb_000343_160--Hb_000780_060 Hb_005686_060 Hb_005686_060 Hb_000343_160--Hb_005686_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.7809 15.6619 5.79428 10.5332 10.2428 18.835
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.4071 13.4287 8.37218 5.44954 3.25384

CAGE analysis