Hb_003498_130

Information

Type -
Description -
Location Contig3498: 255087-265757
Sequence    

Annotation

kegg
ID cit:102622723
description protein ROOT HAIR DEFECTIVE 3 homolog 2-like
nr
ID XP_006468447.1
description PREDICTED: protein ROOT HAIR DEFECTIVE 3 homolog 2-like [Citrus sinensis]
swissprot
ID Q9FKE9
description Protein ROOT HAIR DEFECTIVE 3 homolog 2 OS=Arabidopsis thaliana GN=At5g45160 PE=2 SV=1
trembl
ID A0A067KLH1
description Protein ROOT HAIR DEFECTIVE 3 homolog OS=Jatropha curcas GN=JCGZ_13554 PE=3 SV=1
Gene Ontology
ID GO:0005789
description protein root hair defective 3 homolog 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36381: 223227-265974
cDNA
(Sanger)
(ID:Location)		 006_A13.ab1: 259595-265974 , 028_L13.ab1: 259620-265970

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003498_130 0.0 - - PREDICTED: protein ROOT HAIR DEFECTIVE 3 homolog 2-like [Citrus sinensis]
2 Hb_002005_080 0.0888189642 - - PREDICTED: uncharacterized protein LOC105649750 isoform X1 [Jatropha curcas]
3 Hb_006909_010 0.0910907972 - - 5-oxoprolinase, putative [Ricinus communis]
4 Hb_000106_120 0.1043662147 - - hypothetical protein glysoja_007050 [Glycine soja]
5 Hb_000684_290 0.1074929548 - - ubiquitin protein ligase E3a, putative [Ricinus communis]
6 Hb_011928_020 0.108888074 - - something about silencing protein sas10, putative [Ricinus communis]
7 Hb_000950_060 0.1149930238 - - PREDICTED: CCAAT/enhancer-binding protein zeta [Jatropha curcas]
8 Hb_009270_010 0.1172412692 - - PREDICTED: uncharacterized protein LOC103421213 [Malus domestica]
9 Hb_010021_010 0.1200823676 - - unnamed protein product [Coffea canephora]
10 Hb_002639_080 0.1203810015 - - PREDICTED: large proline-rich protein BAG6 isoform X1 [Jatropha curcas]
11 Hb_000631_110 0.1209438191 - - PREDICTED: activating signal cointegrator 1 complex subunit 3 [Jatropha curcas]
12 Hb_001529_040 0.1255606141 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
13 Hb_164898_010 0.1270459299 - - Cysteine-rich protein, putative [Theobroma cacao]
14 Hb_000062_450 0.1273541091 - - hypothetical protein MTR_081s0009, partial [Medicago truncatula]
15 Hb_017358_040 0.1292386544 - - PREDICTED: RNA-dependent RNA polymerase 6-like [Jatropha curcas]
16 Hb_003060_060 0.1294895977 - - PREDICTED: protein transport protein SEC31 homolog B [Jatropha curcas]
17 Hb_001117_170 0.1298533411 - - -
18 Hb_011173_030 0.1301537055 - - pumilio, putative [Ricinus communis]
19 Hb_000940_150 0.1306417486 - - PREDICTED: uncharacterized protein LOC105643779 [Jatropha curcas]
20 Hb_012146_050 0.1311941139 - - PREDICTED: protein translocase subunit SECA2, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_003498_130 Hb_003498_130 Hb_002005_080 Hb_002005_080 Hb_003498_130--Hb_002005_080 Hb_006909_010 Hb_006909_010 Hb_003498_130--Hb_006909_010 Hb_000106_120 Hb_000106_120 Hb_003498_130--Hb_000106_120 Hb_000684_290 Hb_000684_290 Hb_003498_130--Hb_000684_290 Hb_011928_020 Hb_011928_020 Hb_003498_130--Hb_011928_020 Hb_000950_060 Hb_000950_060 Hb_003498_130--Hb_000950_060 Hb_002005_080--Hb_000684_290 Hb_001006_340 Hb_001006_340 Hb_002005_080--Hb_001006_340 Hb_041327_010 Hb_041327_010 Hb_002005_080--Hb_041327_010 Hb_002639_080 Hb_002639_080 Hb_002005_080--Hb_002639_080 Hb_000083_270 Hb_000083_270 Hb_002005_080--Hb_000083_270 Hb_164898_010 Hb_164898_010 Hb_006909_010--Hb_164898_010 Hb_004449_080 Hb_004449_080 Hb_006909_010--Hb_004449_080 Hb_006909_010--Hb_000106_120 Hb_000028_390 Hb_000028_390 Hb_006909_010--Hb_000028_390 Hb_003294_090 Hb_003294_090 Hb_006909_010--Hb_003294_090 Hb_002477_090 Hb_002477_090 Hb_000106_120--Hb_002477_090 Hb_000340_490 Hb_000340_490 Hb_000106_120--Hb_000340_490 Hb_000106_120--Hb_002639_080 Hb_000106_120--Hb_000684_290 Hb_000069_120 Hb_000069_120 Hb_000106_120--Hb_000069_120 Hb_017358_040 Hb_017358_040 Hb_000684_290--Hb_017358_040 Hb_000684_290--Hb_000340_490 Hb_000684_290--Hb_002477_090 Hb_001761_130 Hb_001761_130 Hb_000684_290--Hb_001761_130 Hb_001529_040 Hb_001529_040 Hb_011928_020--Hb_001529_040 Hb_000470_080 Hb_000470_080 Hb_011928_020--Hb_000470_080 Hb_000398_120 Hb_000398_120 Hb_011928_020--Hb_000398_120 Hb_002631_170 Hb_002631_170 Hb_011928_020--Hb_002631_170 Hb_000071_180 Hb_000071_180 Hb_011928_020--Hb_000071_180 Hb_000950_060--Hb_002639_080 Hb_000035_010 Hb_000035_010 Hb_000950_060--Hb_000035_010 Hb_003913_110 Hb_003913_110 Hb_000950_060--Hb_003913_110 Hb_114151_020 Hb_114151_020 Hb_000950_060--Hb_114151_020 Hb_000175_120 Hb_000175_120 Hb_000950_060--Hb_000175_120 Hb_001341_180 Hb_001341_180 Hb_000950_060--Hb_001341_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.32854 9.06549 3.00515 3.59523 8.29584 10.1863
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.25752 2.31992 7.48835 18.2787 11.3137

CAGE analysis