Hb_003502_080

Information

Type -
Description -
Location Contig3502: 75232-95135
Sequence    

Annotation

kegg
ID rcu:RCOM_1538620
description vacuolar protein sorting, putative
nr
ID XP_002519636.1
description vacuolar protein sorting, putative [Ricinus communis]
swissprot
ID Q94KJ7
description Vacuolar protein-sorting-associated protein 33 homolog OS=Arabidopsis thaliana GN=VPS33 PE=1 SV=1
trembl
ID B9S0W7
description Vacuolar protein sorting, putative OS=Ricinus communis GN=RCOM_1538620 PE=4 SV=1
Gene Ontology
ID GO:0005829
description vacuolar protein-sorting-associated protein 33 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36480: 75371-88455 , PASA_asmbl_36481: 88646-93410 , PASA_asmbl_36482: 95916-100633
cDNA
(Sanger)
(ID:Location)		 008_K06.ab1: 88724-93410 , 012_D17.ab1: 88646-93410 , 015_P10.ab1: 88676-93410

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003502_080 0.0 - - vacuolar protein sorting, putative [Ricinus communis]
2 Hb_000465_430 0.0626117376 - - PREDICTED: uncharacterized protein LOC105632325 [Jatropha curcas]
3 Hb_005016_170 0.0645567968 - - conserved hypothetical protein [Ricinus communis]
4 Hb_033843_010 0.0647074242 - - PREDICTED: cell division control protein 2 homolog A isoform X1 [Jatropha curcas]
5 Hb_023001_050 0.0707802579 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
6 Hb_021409_020 0.0814464614 - - PREDICTED: protein yippee-like At4g27745 [Malus domestica]
7 Hb_000204_040 0.0834844531 - - PREDICTED: polyadenylate-binding protein-interacting protein 6 [Jatropha curcas]
8 Hb_000069_160 0.0837983735 - - -
9 Hb_006951_020 0.084400574 - - Rop3 [Hevea brasiliensis]
10 Hb_001369_180 0.0853332326 - - PREDICTED: protein RFT1 homolog isoform X1 [Jatropha curcas]
11 Hb_002671_100 0.0853498892 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase-like [Jatropha curcas]
12 Hb_185830_020 0.0859827452 - - ABC transporter family protein [Hevea brasiliensis]
13 Hb_000120_500 0.0867986742 - - PREDICTED: AT-hook motif nuclear-localized protein 10-like [Jatropha curcas]
14 Hb_000322_100 0.0871234663 - - PREDICTED: casein kinase I isoform delta-like [Jatropha curcas]
15 Hb_007477_080 0.0890243009 - - conserved hypothetical protein [Ricinus communis]
16 Hb_012092_010 0.0901656295 - - PREDICTED: uncharacterized protein LOC105635929 [Jatropha curcas]
17 Hb_003656_130 0.0908679683 - - PREDICTED: protein bem46 isoform X2 [Jatropha curcas]
18 Hb_010120_030 0.0913188662 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
19 Hb_002529_060 0.0915952076 - - PREDICTED: putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282107 [Jatropha curcas]
20 Hb_000045_090 0.0917838316 - - PREDICTED: syntaxin-31 [Jatropha curcas]

Gene co-expression network

sample Hb_003502_080 Hb_003502_080 Hb_000465_430 Hb_000465_430 Hb_003502_080--Hb_000465_430 Hb_005016_170 Hb_005016_170 Hb_003502_080--Hb_005016_170 Hb_033843_010 Hb_033843_010 Hb_003502_080--Hb_033843_010 Hb_023001_050 Hb_023001_050 Hb_003502_080--Hb_023001_050 Hb_021409_020 Hb_021409_020 Hb_003502_080--Hb_021409_020 Hb_000204_040 Hb_000204_040 Hb_003502_080--Hb_000204_040 Hb_012092_010 Hb_012092_010 Hb_000465_430--Hb_012092_010 Hb_002495_040 Hb_002495_040 Hb_000465_430--Hb_002495_040 Hb_000465_430--Hb_033843_010 Hb_000465_430--Hb_005016_170 Hb_000092_100 Hb_000092_100 Hb_000465_430--Hb_000092_100 Hb_001158_220 Hb_001158_220 Hb_005016_170--Hb_001158_220 Hb_002671_100 Hb_002671_100 Hb_005016_170--Hb_002671_100 Hb_000956_030 Hb_000956_030 Hb_005016_170--Hb_000956_030 Hb_010691_060 Hb_010691_060 Hb_005016_170--Hb_010691_060 Hb_003058_130 Hb_003058_130 Hb_033843_010--Hb_003058_130 Hb_001006_170 Hb_001006_170 Hb_033843_010--Hb_001006_170 Hb_033153_050 Hb_033153_050 Hb_033843_010--Hb_033153_050 Hb_003392_040 Hb_003392_040 Hb_033843_010--Hb_003392_040 Hb_000349_060 Hb_000349_060 Hb_023001_050--Hb_000349_060 Hb_105386_010 Hb_105386_010 Hb_023001_050--Hb_105386_010 Hb_023001_050--Hb_000465_430 Hb_023001_050--Hb_005016_170 Hb_023001_050--Hb_012092_010 Hb_000229_040 Hb_000229_040 Hb_021409_020--Hb_000229_040 Hb_002811_360 Hb_002811_360 Hb_021409_020--Hb_002811_360 Hb_000045_090 Hb_000045_090 Hb_021409_020--Hb_000045_090 Hb_002217_310 Hb_002217_310 Hb_021409_020--Hb_002217_310 Hb_003195_060 Hb_003195_060 Hb_021409_020--Hb_003195_060 Hb_000120_500 Hb_000120_500 Hb_000204_040--Hb_000120_500 Hb_000943_070 Hb_000943_070 Hb_000204_040--Hb_000943_070 Hb_141131_010 Hb_141131_010 Hb_000204_040--Hb_141131_010 Hb_000749_150 Hb_000749_150 Hb_000204_040--Hb_000749_150 Hb_000364_010 Hb_000364_010 Hb_000204_040--Hb_000364_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.0323 9.44075 10.422 18.9875 22.7093 35.5998
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.6109 17.3011 16.5342 10.242 5.63893

CAGE analysis